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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-03-23 15:15:00 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-03-23 15:15:00 +0000 |
| commit | aa8e14f1c183bdc57940de974b9773b498595974 (patch) | |
| tree | 8975f218155bc5451f968db6b12d5b18b128f803 /biology/ad2vcf/pkg-descr | |
| parent | d20299d14c70387e5f3f69ebbdacee90272809a1 (diff) | |
| download | ports-aa8e14f1c183bdc57940de974b9773b498595974.tar.gz ports-aa8e14f1c183bdc57940de974b9773b498595974.zip | |
biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF file
ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file. SAM input is read via stdin and the VCF
input file is taken as a command-line argument. This allows expensive BAM/CRAM
decoding to be performed in parallel by a separate samtools process.
Notes
Notes:
svn path=/head/; revision=569033
Diffstat (limited to 'biology/ad2vcf/pkg-descr')
| -rw-r--r-- | biology/ad2vcf/pkg-descr | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/biology/ad2vcf/pkg-descr b/biology/ad2vcf/pkg-descr new file mode 100644 index 000000000000..21df7c875513 --- /dev/null +++ b/biology/ad2vcf/pkg-descr @@ -0,0 +1,6 @@ +ad2vdf extracts allelic depth info from a SAM stream and adds it to a +corresponding single-sample VCF file. SAM input is read via stdin and the VCF +input file is taken as a command-line argument. This allows expensive BAM/CRAM +decoding to be performed in parallel by a separate samtools process. + +WWW: https://github.com/auerlab/ad2vcf |