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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2017-12-22 01:30:26 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2017-12-22 01:30:26 +0000 |
| commit | 302f405a84211485b4b6a0693ec25e09686841aa (patch) | |
| tree | dd304f2187108a03437b87d69564ae6eb2cf6750 /biology/canu/pkg-plist | |
| parent | 1e72c927a71e9596aef690ed02e5ee2c6d1803a1 (diff) | |
| download | ports-302f405a84211485b4b6a0693ec25e09686841aa.tar.gz ports-302f405a84211485b4b6a0693ec25e09686841aa.zip | |
[new port] biology/canu: Single molecule sequence assembler
Approved by: jrm (mentor) or wen (mentor)
Differential Revision: https://reviews.freebsd.org/D13574
Notes
Notes:
svn path=/head/; revision=456950
Diffstat (limited to 'biology/canu/pkg-plist')
| -rw-r--r-- | biology/canu/pkg-plist | 81 |
1 files changed, 81 insertions, 0 deletions
diff --git a/biology/canu/pkg-plist b/biology/canu/pkg-plist new file mode 100644 index 000000000000..ae82abc20cac --- /dev/null +++ b/biology/canu/pkg-plist @@ -0,0 +1,81 @@ +bin/alignGFA +bin/bogart +bin/bogus +bin/canu +bin/correctOverlaps +bin/createFalconSenseInputs +bin/erateEstimate +bin/errorEstimate +bin/estimate-mer-threshold +bin/existDB +bin/falcon_sense +bin/fastqAnalyze +bin/fastqSample +bin/fastqSimulate +bin/fastqSimulate-sort +bin/filterCorrectionOverlaps +bin/findErrors +bin/findErrors-Dump +bin/gatekeeperCreate +bin/gatekeeperDumpFASTQ +bin/gatekeeperDumpMetaData +bin/gatekeeperPartition +bin/generateCorrectionLayouts +bin/leaff +bin/maskMers +bin/merTrim +bin/meryl +bin/mhapConvert +bin/mmapConvert +bin/ovStoreBucketizer +bin/ovStoreBuild +bin/ovStoreDump +bin/ovStoreIndexer +bin/ovStoreSorter +bin/ovStoreStats +bin/overlapConvert +bin/overlapImport +bin/overlapInCore +bin/overlapInCorePartition +bin/overlapPair +bin/positionDB +bin/prefixEditDistance-matchLimitGenerate +bin/readConsensus +bin/simple +bin/splitReads +bin/tgStoreCompress +bin/tgStoreCoverageStat +bin/tgStoreDump +bin/tgStoreFilter +bin/tgStoreLoad +bin/tgTigDisplay +bin/trimReads +bin/utgcns +lib/libcanu.a +lib/libleaff.a +%%SITE_PERL%%/canu/Configure.pm +%%SITE_PERL%%/canu/Consensus.pm +%%SITE_PERL%%/canu/CorrectReads.pm +%%SITE_PERL%%/canu/Defaults.pm +%%SITE_PERL%%/canu/ErrorEstimate.pm +%%SITE_PERL%%/canu/Execution.pm +%%SITE_PERL%%/canu/Gatekeeper.pm +%%SITE_PERL%%/canu/Grid.pm +%%SITE_PERL%%/canu/Grid_Cloud.pm +%%SITE_PERL%%/canu/Grid_DNANexus.pm +%%SITE_PERL%%/canu/Grid_LSF.pm +%%SITE_PERL%%/canu/Grid_PBSTorque.pm +%%SITE_PERL%%/canu/Grid_SGE.pm +%%SITE_PERL%%/canu/Grid_Slurm.pm +%%SITE_PERL%%/canu/HTML.pm +%%SITE_PERL%%/canu/Meryl.pm +%%SITE_PERL%%/canu/Output.pm +%%SITE_PERL%%/canu/OverlapBasedTrimming.pm +%%SITE_PERL%%/canu/OverlapErrorAdjustment.pm +%%SITE_PERL%%/canu/OverlapInCore.pm +%%SITE_PERL%%/canu/OverlapMMap.pm +%%SITE_PERL%%/canu/OverlapMhap.pm +%%SITE_PERL%%/canu/OverlapStore.pm +%%SITE_PERL%%/canu/Report.pm +%%SITE_PERL%%/canu/Unitig.pm +%%JAVAJARDIR%%/mhap-2.1.2.jar |