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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2022-01-19 13:57:36 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2022-01-19 13:57:36 +0000 |
| commit | c9bd01bdf4c1dae17b53482e9dabe000d310cf50 (patch) | |
| tree | 0ae5d8e3ff02b5a9651dbe258d7db49dec778ccc /biology/kallisto/files/patch-src_kseq.h | |
| parent | f9a2f32279b075d36a16ae85664c4b7ead61410c (diff) | |
| download | ports-c9bd01bdf4c1dae17b53482e9dabe000d310cf50.tar.gz ports-c9bd01bdf4c1dae17b53482e9dabe000d310cf50.zip | |
biology/kallisto: Update to 0.48.0
Fixes segfault with --genomebam in 0.46.2
Unbundle htslib
A few new features and performance improvements
Changes: https://github.com/pachterlab/kallisto/tags
Diffstat (limited to 'biology/kallisto/files/patch-src_kseq.h')
| -rw-r--r-- | biology/kallisto/files/patch-src_kseq.h | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/biology/kallisto/files/patch-src_kseq.h b/biology/kallisto/files/patch-src_kseq.h new file mode 100644 index 000000000000..f7712a023fda --- /dev/null +++ b/biology/kallisto/files/patch-src_kseq.h @@ -0,0 +1,12 @@ +--- src/kseq.h.orig 2019-11-04 16:28:52 UTC ++++ src/kseq.h +@@ -32,6 +32,9 @@ + #include <string.h> + #include <stdlib.h> + ++// Prevent redefinition of kstring_t below ++#include <htslib/kstring.h> ++ + #define KS_SEP_SPACE 0 // isspace(): \t, \n, \v, \f, \r + #define KS_SEP_TAB 1 // isspace() && !' ' + #define KS_SEP_LINE 2 // line separator: "\n" (Unix) or "\r\n" (Windows) |