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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2023-11-04 13:12:42 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2023-11-04 13:15:25 +0000 |
| commit | 8a2deaeb09da2b11c7061bd7120c9078717157ee (patch) | |
| tree | b2a542dec1c3a856c7032887bd976ebc0116d295 /biology/kallisto | |
| parent | 5868083c8014853ac26a2b3aab56eb4a2e2fbb81 (diff) | |
| download | ports-8a2deaeb09da2b11c7061bd7120c9078717157ee.tar.gz ports-8a2deaeb09da2b11c7061bd7120c9078717157ee.zip | |
biology/kallisto: Update to 0.50.1,1
Update kallisto index version to 13
A few other new features
Changes: https://github.com/pachterlab/kallisto/releases
Reported by: portscout
Diffstat (limited to 'biology/kallisto')
| -rw-r--r-- | biology/kallisto/Makefile | 3 | ||||
| -rw-r--r-- | biology/kallisto/distinfo | 6 | ||||
| -rw-r--r-- | biology/kallisto/files/patch-src_main.cpp | 10 |
3 files changed, 14 insertions, 5 deletions
diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile index 4ae2b8bd94ec..8774208d9097 100644 --- a/biology/kallisto/Makefile +++ b/biology/kallisto/Makefile @@ -1,7 +1,6 @@ PORTNAME= kallisto DISTVERSIONPREFIX= v -DISTVERSION= 0.50.0 -PORTREVISION= 2 +DISTVERSION= 0.50.1 PORTEPOCH= 1 CATEGORIES= biology diff --git a/biology/kallisto/distinfo b/biology/kallisto/distinfo index e216bb4ae394..f01c0d8e6e1c 100644 --- a/biology/kallisto/distinfo +++ b/biology/kallisto/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1688395958 -SHA256 (pachterlab-kallisto-v0.50.0_GH0.tar.gz) = f9cc0058d08206cb6dde4a4dcaf8a778df5a939a6e021508eea9b00b0d6d5368 -SIZE (pachterlab-kallisto-v0.50.0_GH0.tar.gz) = 5939018 +TIMESTAMP = 1698923323 +SHA256 (pachterlab-kallisto-v0.50.1_GH0.tar.gz) = 030752bab3b0e33cd3f23f6d8feddd74194e5513532ffbf23519e84db2a86d34 +SIZE (pachterlab-kallisto-v0.50.1_GH0.tar.gz) = 5947303 diff --git a/biology/kallisto/files/patch-src_main.cpp b/biology/kallisto/files/patch-src_main.cpp new file mode 100644 index 000000000000..2eadc428781c --- /dev/null +++ b/biology/kallisto/files/patch-src_main.cpp @@ -0,0 +1,10 @@ +--- src/main.cpp.orig 2023-11-02 11:38:09 UTC ++++ src/main.cpp +@@ -11,6 +11,7 @@ + #include <limits> + + #include <cstdio> ++#include <unistd.h> // rmdir() + + #include "common.h" + #include "ProcessReads.h" |