diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-06-29 14:04:48 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-06-29 14:04:48 +0000 |
| commit | a881e9d0c3ccd79a71282e2e239cfbf2c22107f7 (patch) | |
| tree | 57076d18f93f2d853eb802f6f3da85f938148586 /biology/mmseqs2 | |
| parent | c4a4d868413e3d1a19e0cc0a15313b4dd28dd0cd (diff) | |
| download | ports-a881e9d0c3ccd79a71282e2e239cfbf2c22107f7.tar.gz ports-a881e9d0c3ccd79a71282e2e239cfbf2c22107f7.zip | |
biology/mmseqs2: Fix runtime error when built with clang
Disable IPS4O to avoid deadlocks (upstream developer fix)
Removing USE_GCC should fix pkg build errors caused by
Diffstat (limited to 'biology/mmseqs2')
| -rw-r--r-- | biology/mmseqs2/Makefile | 8 |
1 files changed, 2 insertions, 6 deletions
diff --git a/biology/mmseqs2/Makefile b/biology/mmseqs2/Makefile index 755ed6f7aaa0..2ca647d74995 100644 --- a/biology/mmseqs2/Makefile +++ b/biology/mmseqs2/Makefile @@ -1,6 +1,6 @@ PORTNAME= MMseqs2 DISTVERSION= 13-45111 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -20,18 +20,14 @@ USE_PERL5= build SHEBANG_GLOB= *.sh GH_ACCOUNT= soedinglab -CMAKE_ARGS+= -DUSE_SYSTEM_ZSTD:BOOL=ON +CMAKE_ARGS+= -DUSE_SYSTEM_ZSTD:BOOL=ON -DDISABLE_IPS4O:BOOL=ON LDFLAGS+= -lpthread PLIST_FILES= bin/mmseqs ${DATADIR}/bash-completion.sh .include <bsd.port.pre.mk> -# Hangs when built with clang and SSE or x86-64 only. Works fine with -# -march=native. Upstream is investigating. To build fully optimized, -# non-portable binary with clang: env CFLAGS='-O2 -march=native' make .if ${ARCH} == "amd64" && empty(CFLAGS:M*march=native*) -USE_GCC= yes # Need at least SSE2 for decent performance. x86-64 groups SSE2 with other # common features in low-end AMD64 CPUs. CFLAGS+= -march=x86-64 |