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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2020-09-25 06:57:43 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2020-09-25 06:57:43 +0000 |
| commit | 9ea8f6721b5e12fe9e62ff3acb47c42343c5d78f (patch) | |
| tree | 957621288658336120be8063b54b560e4d8ee9b0 /biology/ncbi-cxx-toolkit | |
| parent | 0de00502f9e9d5bb6d5ea2d2fcd302484b42e9cb (diff) | |
| download | ports-9ea8f6721b5e12fe9e62ff3acb47c42343c5d78f.tar.gz ports-9ea8f6721b5e12fe9e62ff3acb47c42343c5d78f.zip | |
biology/ncbi-cxx-toolkit: Update 21.0.0 -> 22.0.0
Notes
Notes:
svn path=/head/; revision=549992
Diffstat (limited to 'biology/ncbi-cxx-toolkit')
| -rw-r--r-- | biology/ncbi-cxx-toolkit/Makefile | 19 | ||||
| -rw-r--r-- | biology/ncbi-cxx-toolkit/distinfo | 6 | ||||
| -rw-r--r-- | biology/ncbi-cxx-toolkit/pkg-descr | 2 |
3 files changed, 17 insertions, 10 deletions
diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 1b16be820ffd..57d36a0e8eeb 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,10 +1,9 @@ # $FreeBSD$ PORTNAME= ncbi-cxx-toolkit -DISTVERSION= 21_0_0 -PORTREVISION= 2 +DISTVERSION= 22_0_0 CATEGORIES= biology science devel -MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2018/Apr_2_2018/ +MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/ DISTNAME= ncbi_cxx--${DISTVERSION} MAINTAINER= yuri@FreeBSD.org @@ -13,7 +12,8 @@ COMMENT= NCBI C++ Toolkit LICENSE= PD LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE -LIB_DEPENDS= libpcre.so:devel/pcre +LIB_DEPENDS= liblmdb.so:databases/lmdb \ + libpcre.so:devel/pcre RUN_DEPENDS= bash:shells/bash USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg @@ -23,8 +23,15 @@ USE_XORG= x11 xpm GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-debug --with-dll --without-static -post-install: # autoplist: thousands of files - @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/run_with_lock +post-install: + # strip + @${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD} + @${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD} + # remove an empty directory + @${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg + # remove the conflicting file + @${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so + # autoplist: thousands of files @cd ${STAGEDIR}${PREFIX} && \ ${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \ ${FIND} * -type f -or -type l >> ${TMPPLIST} diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index d752283ccc1c..5ded16bce9b4 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1538937167 -SHA256 (ncbi_cxx--21_0_0.tar.gz) = 48cc3ae24ca63d1ab1be148e7525e8c5b9f4eaa5eb36d172800784b640a84a4f -SIZE (ncbi_cxx--21_0_0.tar.gz) = 52661343 +TIMESTAMP = 1600993142 +SHA256 (ncbi_cxx--22_0_0.tar.gz) = ef39429bbc7f13c44c0d327432d9cfb430f9f20d10d825e6b2c4ddd7ccce457f +SIZE (ncbi_cxx--22_0_0.tar.gz) = 56042079 diff --git a/biology/ncbi-cxx-toolkit/pkg-descr b/biology/ncbi-cxx-toolkit/pkg-descr index 0c1364ee0976..d318cdf7ac0e 100644 --- a/biology/ncbi-cxx-toolkit/pkg-descr +++ b/biology/ncbi-cxx-toolkit/pkg-descr @@ -21,4 +21,4 @@ It contains: * Portable FLTK and OpenGL based GUI and graphic libraries * XmlWrapp (XML parsing and handling, XSLT, XPath) -WWW: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ +WWW: https://ncbi.github.io/cxx-toolkit/ |