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| author | Joseph Mingrone <jrm@FreeBSD.org> | 2022-08-26 04:19:52 +0000 |
|---|---|---|
| committer | Joseph Mingrone <jrm@FreeBSD.org> | 2022-08-26 04:22:46 +0000 |
| commit | 5aec6e4a190d0d6a6f78ce9c5674fd5bf6b4b5d0 (patch) | |
| tree | e5f158d838035ef2226f67bb9f369f516735de24 /biology/paml/Makefile | |
| parent | 78cd7fdce037d80056ef18a97a9018c5529c99ae (diff) | |
| download | ports-5aec6e4a190d0d6a6f78ce9c5674fd5bf6b4b5d0.tar.gz ports-5aec6e4a190d0d6a6f78ce9c5674fd5bf6b4b5d0.zip | |
biology/paml: Update to 4.10.5
https://github.com/abacus-gene/paml/releases/tag/v4.10.0
https://github.com/abacus-gene/paml/releases/tag/untagged-a5659203e8ec0ddb58b8
https://github.com/abacus-gene/paml/releases/tag/v4.10.5
Sponsored by: The FreeBSD Foundation
Diffstat (limited to 'biology/paml/Makefile')
| -rw-r--r-- | biology/paml/Makefile | 20 |
1 files changed, 9 insertions, 11 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile index a8c84d9fb60c..d0f49022b3f7 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -1,21 +1,22 @@ PORTNAME= paml -PORTVERSION= 4.9j +DISTVERSIONPREFIX= v +DISTVERSION= 4.10.5 CATEGORIES= biology -MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/ -DISTNAME= ${PORTNAME}${DISTVERSION} MAINTAINER= jrm@FreeBSD.org COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) LICENSE= GPLv3 -USES= dos2unix gmake tar:tgz - -DOS2UNIX_GLOB= *.HKYG5 *.aa *.c *.ctl *.dat *.nexus *.nuc *.phy *.result *.tre \ +USES= dos2unix gmake +DOS2UNIX_GLOB= *.aa *.c *.ctl *.dat *.HKYG5 *.nexus *.nuc *.phy *.result *.tre \ *.trees *.txt *.xml paupblock paupend +USE_GITHUB= yes +GH_ACCOUNT= abacus-gene BINARIES= baseml basemlg chi2 codeml evolver evolverNSbranches \ - evolverNSbranchsites evolverNSsites pamp yn00 + evolverNSbranchsites evolverNSsites infinitesites mcmctree pamp \ + yn00 OPTIONS_DEFINE= DOCS EXAMPLES @@ -37,15 +38,12 @@ do-install: do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/doc/* ${STAGEDIR}${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/README.txt ${STAGEDIR}${DOCSDIR} + ${INSTALL_DATA} ${WRKSRC}/README.md ${STAGEDIR}${DOCSDIR} do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC} && ${COPYTREE_SHARE} "dat Technical" \ ${STAGEDIR}${EXAMPLESDIR}) (cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) -.for f in *.aa *.ctl *.dat *.nuc *.trees *.txt paup* - ${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${EXAMPLESDIR} -.endfor .include <bsd.port.mk> |