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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2018-04-15 17:45:52 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2018-04-15 17:45:52 +0000 |
| commit | 0a551ec593fa43281cb9bd50026ac523ada010f8 (patch) | |
| tree | 3bac8ed5a831022b300765bbbf8956314bda5abc /biology/smithwaterman/pkg-descr | |
| parent | 65366c2e59dd87323ef2a904d0a19f84bd90a428 (diff) | |
| download | ports-0a551ec593fa43281cb9bd50026ac523ada010f8.tar.gz ports-0a551ec593fa43281cb9bd50026ac523ada010f8.zip | |
biology/smithwaterman: Smith-waterman-gotoh alignment algorithm
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15072
Notes
Notes:
svn path=/head/; revision=467402
Diffstat (limited to 'biology/smithwaterman/pkg-descr')
| -rw-r--r-- | biology/smithwaterman/pkg-descr | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/biology/smithwaterman/pkg-descr b/biology/smithwaterman/pkg-descr new file mode 100644 index 000000000000..8569aa85b397 --- /dev/null +++ b/biology/smithwaterman/pkg-descr @@ -0,0 +1,8 @@ +The Smith-Waterman algorithm performs local sequence alignment; that is, for +determining similar regions between two strings of nucleic acid sequences or +protein sequences. Instead of looking at the entire sequence, the +Smith-Waterman algorithm compares segments of all possible lengths and +optimizes the similarity measure. Gotoh and Atschul added optimizations making +it practical for larger problems. + +WWW: https://github.com/ekg/smithwaterman |