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| author | Thierry Thomas <thierry@FreeBSD.org> | 2022-05-02 20:03:22 +0000 |
|---|---|---|
| committer | Thierry Thomas <thierry@FreeBSD.org> | 2022-05-04 20:32:14 +0000 |
| commit | 31c941c09e26577b5dd107009766d7951ca10fd6 (patch) | |
| tree | 8eec226de07002baa2e3a40e0c0617b6922993cc /devel/R-cran-msm | |
| parent | b838b9191f9fd3bbff8af648ce5d314207850579 (diff) | |
| download | ports-31c941c09e26577b5dd107009766d7951ca10fd6.tar.gz ports-31c941c09e26577b5dd107009766d7951ca10fd6.zip | |
devel/R-cran-msm: adding Multi-State Markov and Hidden Markov Models in Continuous Time
Diffstat (limited to 'devel/R-cran-msm')
| -rw-r--r-- | devel/R-cran-msm/Makefile | 18 | ||||
| -rw-r--r-- | devel/R-cran-msm/distinfo | 3 | ||||
| -rw-r--r-- | devel/R-cran-msm/pkg-descr | 9 | ||||
| -rw-r--r-- | devel/R-cran-msm/pkg-plist | 40 |
4 files changed, 70 insertions, 0 deletions
diff --git a/devel/R-cran-msm/Makefile b/devel/R-cran-msm/Makefile new file mode 100644 index 000000000000..1ac0548de6f2 --- /dev/null +++ b/devel/R-cran-msm/Makefile @@ -0,0 +1,18 @@ +# Created by: Thierry Thomas <thierry@pompo.net> + +PORTNAME= msm +PORTVERSION= 1.6.9 +CATEGORIES= devel +DISTNAME= ${PORTNAME}_${DISTVERSION} + +MAINTAINER= thierry@FreeBSD.org +COMMENT= Multi-State Markov and Hidden Markov Models in Continuous Time + +LICENSE= GPLv2+ + +RUN_DEPENDS= R-cran-expm>0:math/R-cran-expm \ + R-cran-mvtnorm>0:math/R-cran-mvtnorm + +USES= cran:compiles + +.include <bsd.port.mk> diff --git a/devel/R-cran-msm/distinfo b/devel/R-cran-msm/distinfo new file mode 100644 index 000000000000..0418c1abf2ca --- /dev/null +++ b/devel/R-cran-msm/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1651521129 +SHA256 (msm_1.6.9.tar.gz) = aefcd9bb40b0167311d088d6fe23fdf7aa35deaac0f8b47ef02377cff5577023 +SIZE (msm_1.6.9.tar.gz) = 847034 diff --git a/devel/R-cran-msm/pkg-descr b/devel/R-cran-msm/pkg-descr new file mode 100644 index 000000000000..529d5b1809e5 --- /dev/null +++ b/devel/R-cran-msm/pkg-descr @@ -0,0 +1,9 @@ +Functions for fitting continuous-time Markov and hidden Markov multi-state +models to longitudinal data. Designed for processes observed at arbitrary times +in continuous time (panel data) but some other observation schemes are +supported. Both Markov transition rates and the hidden Markov output process can +be modelled in terms of covariates, which may be constant or piecewise-constant +in time. + +WWW: https://cran.r-project.org/package=msm +WWW: https://github.com/chjackson/msm diff --git a/devel/R-cran-msm/pkg-plist b/devel/R-cran-msm/pkg-plist new file mode 100644 index 000000000000..600bfd804b3d --- /dev/null +++ b/devel/R-cran-msm/pkg-plist @@ -0,0 +1,40 @@ +%%R_MOD_DIR%%/CITATION +%%R_MOD_DIR%%/DESCRIPTION +%%R_MOD_DIR%%/INDEX +%%R_MOD_DIR%%/Meta/Rd.rds +%%R_MOD_DIR%%/Meta/data.rds +%%R_MOD_DIR%%/Meta/features.rds +%%R_MOD_DIR%%/Meta/hsearch.rds +%%R_MOD_DIR%%/Meta/links.rds +%%R_MOD_DIR%%/Meta/nsInfo.rds +%%R_MOD_DIR%%/Meta/package.rds +%%R_MOD_DIR%%/Meta/vignette.rds +%%R_MOD_DIR%%/NAMESPACE +%%R_MOD_DIR%%/NEWS +%%R_MOD_DIR%%/R/msm +%%R_MOD_DIR%%/R/msm.rdb +%%R_MOD_DIR%%/R/msm.rdx +%%R_MOD_DIR%%/data/Rdata.rdb +%%R_MOD_DIR%%/data/Rdata.rds +%%R_MOD_DIR%%/data/Rdata.rdx +%%R_MOD_DIR%%/doc/index.html +%%R_MOD_DIR%%/doc/msm-manual.R +%%R_MOD_DIR%%/doc/msm-manual.pdf +%%R_MOD_DIR%%/help/AnIndex +%%R_MOD_DIR%%/help/aliases.rds +%%R_MOD_DIR%%/help/msm.rdb +%%R_MOD_DIR%%/help/msm.rdx +%%R_MOD_DIR%%/help/paths.rds +%%R_MOD_DIR%%/html/00Index.html +%%R_MOD_DIR%%/html/R.css +%%R_MOD_DIR%%/libs/msm.so +%%R_MOD_DIR%%/tests/test_base.R +%%R_MOD_DIR%%/tests/testthat/helper.r +%%R_MOD_DIR%%/tests/testthat/test_analyticp.r +%%R_MOD_DIR%%/tests/testthat/test_datasumm.r +%%R_MOD_DIR%%/tests/testthat/test_deriv.r +%%R_MOD_DIR%%/tests/testthat/test_models.r +%%R_MOD_DIR%%/tests/testthat/test_models_hmm.r +%%R_MOD_DIR%%/tests/testthat/test_models_hmmmulti.r +%%R_MOD_DIR%%/tests/testthat/test_models_misc.r +%%R_MOD_DIR%%/tests/testthat/test_utils.r |