diff options
| author | Brendan Fabeny <bf@FreeBSD.org> | 2011-11-27 07:02:15 +0000 |
|---|---|---|
| committer | Brendan Fabeny <bf@FreeBSD.org> | 2011-11-27 07:02:15 +0000 |
| commit | 5d57d97db9a37dcb229b79d5e3ea46fd617b3cb4 (patch) | |
| tree | e7eb97715b545d7e1c7c80715b1287cc8330e8fa /math | |
| parent | 0a0a56c4feb0619717bd8d0f81de4a52e8c7b96c (diff) | |
| download | ports-5d57d97db9a37dcb229b79d5e3ea46fd617b3cb4.tar.gz ports-5d57d97db9a37dcb229b79d5e3ea46fd617b3cb4.zip | |
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports
Approved by: linimon (portmgr), thierry, tota, wen
Feature safe: yes
Notes
Notes:
svn path=/head/; revision=286477
Diffstat (limited to 'math')
30 files changed, 262 insertions, 158 deletions
diff --git a/math/R-cran-RSvgDevice/Makefile b/math/R-cran-RSvgDevice/Makefile index c6763839aa30..35dcdfa49738 100644 --- a/math/R-cran-RSvgDevice/Makefile +++ b/math/R-cran-RSvgDevice/Makefile @@ -7,7 +7,7 @@ PORTNAME= RSvgDevice PORTVERSION= 0.6.4.1 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= math DISTNAME= ${PORTNAME}_${PORTVERSION} diff --git a/math/R-cran-SuppDists/Makefile b/math/R-cran-SuppDists/Makefile index ed32fa567f25..a9f07b128c4c 100644 --- a/math/R-cran-SuppDists/Makefile +++ b/math/R-cran-SuppDists/Makefile @@ -7,7 +7,7 @@ PORTNAME= SuppDists DISTVERSION= 1.1-8 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MASTER_SITES= ${MASTER_CRAN_SITES} \ http://r.research.att.com/benchmarks/:benchmark \ diff --git a/math/R-cran-Zelig/Makefile b/math/R-cran-Zelig/Makefile index c38b240d26bd..6f9a18afb206 100644 --- a/math/R-cran-Zelig/Makefile +++ b/math/R-cran-Zelig/Makefile @@ -7,6 +7,7 @@ PORTNAME= Zelig DISTVERSION= 3.5.3 +PORTREVISION= 1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-car/Makefile b/math/R-cran-car/Makefile index 672eeabda3d5..348509acd0c9 100644 --- a/math/R-cran-car/Makefile +++ b/math/R-cran-car/Makefile @@ -7,6 +7,7 @@ PORTNAME= car DISTVERSION= 2.0-11 +PORTREVISION= 1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-coda/Makefile b/math/R-cran-coda/Makefile index 251bbf2929a8..a37eb1d23e06 100644 --- a/math/R-cran-coda/Makefile +++ b/math/R-cran-coda/Makefile @@ -7,6 +7,7 @@ PORTNAME= coda DISTVERSION= 0.14-6 +PORTREVISION= 1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-deldir/Makefile b/math/R-cran-deldir/Makefile index c1165f7a3753..800f05202b54 100644 --- a/math/R-cran-deldir/Makefile +++ b/math/R-cran-deldir/Makefile @@ -7,6 +7,7 @@ PORTNAME= deldir DISTVERSION= 0.0-16 +PORTREVISION= 1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-gpclib/Makefile b/math/R-cran-gpclib/Makefile index d47b4ab9d892..29645dd52acd 100644 --- a/math/R-cran-gpclib/Makefile +++ b/math/R-cran-gpclib/Makefile @@ -7,7 +7,7 @@ PORTNAME= gpclib DISTVERSION= 1.5-1 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-inline/Makefile b/math/R-cran-inline/Makefile index 6cce7ae9f0ac..a20a4a30f46b 100644 --- a/math/R-cran-inline/Makefile +++ b/math/R-cran-inline/Makefile @@ -7,7 +7,7 @@ PORTNAME= inline PORTVERSION= 0.3.8 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math DISTNAME= ${PORTNAME}_${PORTVERSION} diff --git a/math/R-cran-mvtnorm/Makefile b/math/R-cran-mvtnorm/Makefile index d303671b895b..ddf081e3e5d4 100644 --- a/math/R-cran-mvtnorm/Makefile +++ b/math/R-cran-mvtnorm/Makefile @@ -7,7 +7,7 @@ PORTNAME= mvtnorm PORTVERSION= 0.9.96 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1} diff --git a/math/R-cran-psych/Makefile b/math/R-cran-psych/Makefile index efe63884f1f3..8232a42b5ba5 100644 --- a/math/R-cran-psych/Makefile +++ b/math/R-cran-psych/Makefile @@ -7,7 +7,7 @@ PORTNAME= psych PORTVERSION= 1.0.94 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math science DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1} diff --git a/math/R-cran-sandwich/Makefile b/math/R-cran-sandwich/Makefile index db794678bb29..eaca011a1cc7 100644 --- a/math/R-cran-sandwich/Makefile +++ b/math/R-cran-sandwich/Makefile @@ -7,7 +7,7 @@ PORTNAME= sandwich DISTVERSION= 2.2-8 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-sm/Makefile b/math/R-cran-sm/Makefile index e0521428672f..f0eb12a2dbb3 100644 --- a/math/R-cran-sm/Makefile +++ b/math/R-cran-sm/Makefile @@ -7,7 +7,7 @@ PORTNAME= sm DISTVERSION= 2.2-4.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-sp/Makefile b/math/R-cran-sp/Makefile index f52f5a2c14a5..76a5c7fc4f76 100644 --- a/math/R-cran-sp/Makefile +++ b/math/R-cran-sp/Makefile @@ -6,15 +6,14 @@ # PORTNAME= sp -PORTVERSION= 0.9.78 -PORTREVISION= 3 +DISTVERSION= 0.9-91 CATEGORIES= math -DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1} +DISTNAME= ${PORTNAME}_${DISTVERSION} MAINTAINER= wen@FreeBSD.org COMMENT= R Classes and Methods for Spatial Data -USE_R_MOD= yes +USE_R_MOD= yes R_MOD_AUTOPLIST= yes .include <bsd.port.mk> diff --git a/math/R-cran-sp/distinfo b/math/R-cran-sp/distinfo index 73c541c4aad1..eb6df00ced12 100644 --- a/math/R-cran-sp/distinfo +++ b/math/R-cran-sp/distinfo @@ -1,2 +1,2 @@ -SHA256 (sp_0.9-78.tar.gz) = 9f805a5ae0acec9d449b65b62e8a496b7ac22f645918f5139e566b529eb5f549 -SIZE (sp_0.9-78.tar.gz) = 717610 +SHA256 (sp_0.9-91.tar.gz) = b4615518e726785fec237eb314a56491c671f2ae0121fca8ae9bc1ed7c224297 +SIZE (sp_0.9-91.tar.gz) = 596365 diff --git a/math/R-cran-spdep/Makefile b/math/R-cran-spdep/Makefile index 4f88b2bd7aa2..5b1e31ec9795 100644 --- a/math/R-cran-spdep/Makefile +++ b/math/R-cran-spdep/Makefile @@ -7,6 +7,7 @@ PORTNAME= spdep DISTVERSION= 0.5-41 +PORTREVISION= 1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-xts/Makefile b/math/R-cran-xts/Makefile index 2c34daec1eb5..72fa914398e3 100644 --- a/math/R-cran-xts/Makefile +++ b/math/R-cran-xts/Makefile @@ -7,7 +7,7 @@ PORTNAME= xts DISTVERSION= 0.8-2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-zoo/Makefile b/math/R-cran-zoo/Makefile index c893423d0f1a..329981992c7d 100644 --- a/math/R-cran-zoo/Makefile +++ b/math/R-cran-zoo/Makefile @@ -7,6 +7,7 @@ PORTNAME= zoo DISTVERSION= 1.7-6 +PORTREVISION= 1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R/Makefile b/math/R/Makefile index 3925a905c5c3..84589d93198e 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -7,7 +7,7 @@ # PORTNAME?= R -PORTVERSION= 2.13.2 +PORTVERSION= 2.14.0 CATEGORIES= math lang MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \ ftp://cran.r-project.org/pub/R/src/base/R-2/ \ @@ -47,7 +47,7 @@ CONFIGURE_ENV= FCFLAGS="${FFLAGS}" \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" \ R_LD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}" TAR="${TAR}" OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \ - ICU "Improve collation in multibyte locales with ICU" on \ + ICU "Use ICU for collation in multibyte locales" on \ NLS "Build with NLS support" on \ PCRE_PORT "Use PCRE port instead of bundled source" on \ THREADS "Build a multithreaded R" on @@ -55,13 +55,13 @@ OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \ OPTIONS+= GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \ JPEG "Enable the jpeg() graphics device" on \ LETTER_PAPER "Use US Letter paper" off \ - LIBR "Install libR, and a dynamically-linked, rather than a static R" on \ - PANGOCAIRO "Enable cairo and pango in the X11() graphics device" on \ + LIBR "Install libR and a dynamically-linked R" on \ + PANGOCAIRO "Enable cairo and pango in graphics devices" on \ PNG "Enable the png() graphics device" on \ TCLTK "Use Tcl/Tk (for the tcltk package)" on \ X11 "Enable the X11() graphics device" on \ - DVI_MANUALS "Install DVI manuals (requires TeX)" off \ - INFO_MANUALS "Install GNU info manuals" on + INFO_MANUALS "Install GNU info manuals" on \ + PDF_MANUALS "Install PDF manuals (requires TeX)" off .endif # !LIBR_SLAVEPORT PLIST_SUB= R_SOVERSION="${R_SOVERSION}" \ RBLAS_SOVERSION="${RBLAS_SOVERSION}" \ @@ -207,19 +207,25 @@ ALL_TARGET+= info INFO= R-FAQ R-admin R-data R-exts R-intro R-lang .endif -.if defined(WITH_DVI_MANUALS) && !defined(NOPORTDOCS) -BUILD_DEPENDS += texi2dvi:${PORTSDIR}/print/texinfo \ - tex:${PORTSDIR}/print/teTeX-base -ALL_TARGET+= dvi -INSTALL_TARGET+= install-dvi -PLIST_SUB+= DVI_MANUAL="" +.if defined(WITH_PDF_MANUALS) && !defined(NOPORTDOCS) +BUILD_DEPENDS += pdftex:${PORTSDIR}/print/teTeX-base \ + texi2dvi:${PORTSDIR}/print/texinfo +ALL_TARGET+= pdf +INSTALL_TARGET+= install-pdf +PLIST_SUB+= PDF_MANUAL="" .else -PLIST_SUB+= DVI_MANUAL="@comment " +PLIST_SUB+= PDF_MANUAL="@comment " .endif .endif # LIBR_SLAVEPORT .endif # !LIBRMATH_SLAVEPORT post-patch: + @${REINPLACE_CMD} -e '\|R_RD4PDF|s|,inconsolata||' \ + ${WRKSRC}/configure \ + ${WRKSRC}/src/library/tools/R/Rd2dvi.R \ + ${WRKSRC}/src/library/utils/R/help.R + @${REINPLACE_CMD} -e '\|LIBS=|s|-lrt ||' \ + ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|(libdir)/pkgconfig|(prefix)/libdata/pkgconfig|g' \ ${WRKSRC}/src/nmath/standalone/Makefile.in \ ${WRKSRC}/src/unix/Makefile.in diff --git a/math/R/distinfo b/math/R/distinfo index c8760986fb53..ca9844509812 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1,2 +1,2 @@ -SHA256 (R-2.13.2.tar.gz) = a1c8733030636c86efa23f6f22dd673a0a54d0fedcffcc8c8deb03da8f972330 -SIZE (R-2.13.2.tar.gz) = 22161810 +SHA256 (R-2.14.0.tar.gz) = 036204f56f8128e633a5d2fe56ebe0ba5a5e8501abe2056736d12a99bf69b910 +SIZE (R-2.14.0.tar.gz) = 22675106 diff --git a/math/R/files/patch-doc__manual__refman.top b/math/R/files/patch-doc__manual__refman.top new file mode 100644 index 000000000000..9d239cbd25f1 --- /dev/null +++ b/math/R/files/patch-doc__manual__refman.top @@ -0,0 +1,33 @@ +--- doc/manual/refman.top.orig 2011-11-23 12:21:46.000000000 -0500 ++++ doc/manual/refman.top 2011-11-23 12:22:31.000000000 -0500 +@@ -4,18 +4,18 @@ + + %% Set PDF 1.5 and compression, including object compression + %% Needed for MiKTeX -- most other distributions default to this +-\ifx\pdfoutput\undefined +-\else +- \ifx\pdfoutput\relax +- \else +- \ifnum\pdfoutput>0 +- % PDF output +- \pdfminorversion=5 +- \pdfcompresslevel=9 +- \pdfobjcompresslevel=2 +- \fi +- \fi +-\fi ++%%\ifx\pdfoutput\undefined ++%%\else ++%% \ifx\pdfoutput\relax ++%% \else ++%% \ifnum\pdfoutput>0 ++%% % PDF output ++%% \pdfminorversion=5 ++%% \pdfcompresslevel=9 ++%% \pdfobjcompresslevel=2 ++%% \fi ++%% \fi ++%%\fi + + \makeatletter + \renewcommand\@pnumwidth{2.05em} % over 1000 pages diff --git a/math/R/pkg-plist b/math/R/pkg-plist index 6c01398017d4..2f789a1db59c 100644 --- a/math/R/pkg-plist +++ b/math/R/pkg-plist @@ -177,6 +177,8 @@ lib/R/library/Matrix/Copyrights lib/R/library/Matrix/DESCRIPTION lib/R/library/Matrix/Doxyfile lib/R/library/Matrix/INDEX +lib/R/library/Matrix/test-tools-1.R +lib/R/library/Matrix/test-tools-Matrix.R lib/R/library/Matrix/Meta/Rd.rds lib/R/library/Matrix/Meta/data.rds lib/R/library/Matrix/Meta/hsearch.rds @@ -354,6 +356,8 @@ lib/R/library/cluster/help/paths.rds lib/R/library/cluster/html/00Index.html lib/R/library/cluster/html/R.css lib/R/library/cluster/libs/cluster.so +%%NLS%%lib/R/library/cluster/po/de/LC_MESSAGES/R-cluster.mo +%%NLS%%lib/R/library/cluster/po/en@quot/LC_MESSAGES/R-cluster.mo lib/R/library/codetools/DESCRIPTION lib/R/library/codetools/INDEX lib/R/library/codetools/Meta/Rd.rds @@ -396,15 +400,15 @@ lib/R/library/compiler/html/R.css %%NLS%%lib/R/library/compiler/po/ja/LC_MESSAGES/R-compiler.mo %%NLS%%lib/R/library/compiler/po/pt_BR/LC_MESSAGES/R-compiler.mo %%NLS%%lib/R/library/compiler/po/ru/LC_MESSAGES/R-compiler.mo -%%NLS%%lib/R/library/compiler/po/zh_CN/LC_MESSAGES/R-compiler.mo lib/R/library/datasets/DESCRIPTION lib/R/library/datasets/INDEX +lib/R/library/datasets/NAMESPACE lib/R/library/datasets/Meta/Rd.rds lib/R/library/datasets/Meta/data.rds lib/R/library/datasets/Meta/hsearch.rds lib/R/library/datasets/Meta/links.rds +lib/R/library/datasets/Meta/nsInfo.rds lib/R/library/datasets/Meta/package.rds -lib/R/library/datasets/R/datasets lib/R/library/datasets/data/Rdata.rdb lib/R/library/datasets/data/Rdata.rds lib/R/library/datasets/data/Rdata.rdx @@ -456,95 +460,95 @@ lib/R/library/grDevices/NAMESPACE lib/R/library/grDevices/R/grDevices lib/R/library/grDevices/R/grDevices.rdb lib/R/library/grDevices/R/grDevices.rdx -lib/R/library/grDevices/afm/CM_boldx_10.afm -lib/R/library/grDevices/afm/CM_boldx_italic_10.afm -lib/R/library/grDevices/afm/CM_italic_10.afm -lib/R/library/grDevices/afm/CM_regular_10.afm -lib/R/library/grDevices/afm/CM_symbol_10.afm -lib/R/library/grDevices/afm/Courier-BoldOblique.afm -lib/R/library/grDevices/afm/Courier-Bold.afm -lib/R/library/grDevices/afm/Courier-Oblique.afm -lib/R/library/grDevices/afm/Courier.afm -lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm -lib/R/library/grDevices/afm/Helvetica-Bold.afm -lib/R/library/grDevices/afm/Helvetica-Oblique.afm -lib/R/library/grDevices/afm/Helvetica.afm +lib/R/library/grDevices/afm/CM_boldx_10.afm.gz +lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz +lib/R/library/grDevices/afm/CM_italic_10.afm.gz +lib/R/library/grDevices/afm/CM_regular_10.afm.gz +lib/R/library/grDevices/afm/CM_symbol_10.afm.gz +lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz +lib/R/library/grDevices/afm/Courier-Bold.afm.gz +lib/R/library/grDevices/afm/Courier-Oblique.afm.gz +lib/R/library/grDevices/afm/Courier.afm.gz +lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz +lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz +lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz +lib/R/library/grDevices/afm/Helvetica.afm.gz lib/R/library/grDevices/afm/MustRead.html lib/R/library/grDevices/afm/README -lib/R/library/grDevices/afm/Symbol.afm -lib/R/library/grDevices/afm/Times-BoldItalic.afm -lib/R/library/grDevices/afm/Times-Bold.afm -lib/R/library/grDevices/afm/Times-Italic.afm -lib/R/library/grDevices/afm/Times-Roman.afm -lib/R/library/grDevices/afm/ZapfDingbats.afm -lib/R/library/grDevices/afm/a010013l.afm -lib/R/library/grDevices/afm/a010015l.afm -lib/R/library/grDevices/afm/a010033l.afm -lib/R/library/grDevices/afm/a010035l.afm -lib/R/library/grDevices/afm/agd_____.afm -lib/R/library/grDevices/afm/agdo____.afm -lib/R/library/grDevices/afm/agw_____.afm -lib/R/library/grDevices/afm/agwo____.afm -lib/R/library/grDevices/afm/b018012l.afm -lib/R/library/grDevices/afm/b018015l.afm -lib/R/library/grDevices/afm/b018032l.afm -lib/R/library/grDevices/afm/b018035l.afm -lib/R/library/grDevices/afm/bkd_____.afm -lib/R/library/grDevices/afm/bkdi____.afm -lib/R/library/grDevices/afm/bkl_____.afm -lib/R/library/grDevices/afm/bkli____.afm -lib/R/library/grDevices/afm/c059013l.afm -lib/R/library/grDevices/afm/c059016l.afm -lib/R/library/grDevices/afm/c059033l.afm -lib/R/library/grDevices/afm/c059036l.afm -lib/R/library/grDevices/afm/cmbxti10.afm -lib/R/library/grDevices/afm/cmti10.afm -lib/R/library/grDevices/afm/cob_____.afm -lib/R/library/grDevices/afm/cobo____.afm -lib/R/library/grDevices/afm/com_____.afm -lib/R/library/grDevices/afm/coo_____.afm -lib/R/library/grDevices/afm/hv______.afm -lib/R/library/grDevices/afm/hvb_____.afm -lib/R/library/grDevices/afm/hvbo____.afm -lib/R/library/grDevices/afm/hvn_____.afm -lib/R/library/grDevices/afm/hvnb____.afm -lib/R/library/grDevices/afm/hvnbo___.afm -lib/R/library/grDevices/afm/hvno____.afm -lib/R/library/grDevices/afm/hvo_____.afm 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+lib/R/library/grDevices/afm/hvb_____.afm.gz +lib/R/library/grDevices/afm/hvbo____.afm.gz +lib/R/library/grDevices/afm/hvn_____.afm.gz +lib/R/library/grDevices/afm/hvnb____.afm.gz +lib/R/library/grDevices/afm/hvnbo___.afm.gz +lib/R/library/grDevices/afm/hvno____.afm.gz +lib/R/library/grDevices/afm/hvo_____.afm.gz +lib/R/library/grDevices/afm/n019003l.afm.gz +lib/R/library/grDevices/afm/n019004l.afm.gz +lib/R/library/grDevices/afm/n019023l.afm.gz +lib/R/library/grDevices/afm/n019024l.afm.gz +lib/R/library/grDevices/afm/n019043l.afm.gz +lib/R/library/grDevices/afm/n019044l.afm.gz +lib/R/library/grDevices/afm/n019063l.afm.gz +lib/R/library/grDevices/afm/n019064l.afm.gz +lib/R/library/grDevices/afm/n021003l.afm.gz +lib/R/library/grDevices/afm/n021004l.afm.gz +lib/R/library/grDevices/afm/n021023l.afm.gz +lib/R/library/grDevices/afm/n021024l.afm.gz +lib/R/library/grDevices/afm/n022003l.afm.gz +lib/R/library/grDevices/afm/n022004l.afm.gz +lib/R/library/grDevices/afm/n022023l.afm.gz +lib/R/library/grDevices/afm/n022024l.afm.gz +lib/R/library/grDevices/afm/ncb_____.afm.gz +lib/R/library/grDevices/afm/ncbi____.afm.gz +lib/R/library/grDevices/afm/nci_____.afm.gz +lib/R/library/grDevices/afm/ncr_____.afm.gz +lib/R/library/grDevices/afm/p052003l.afm.gz +lib/R/library/grDevices/afm/p052004l.afm.gz +lib/R/library/grDevices/afm/p052023l.afm.gz +lib/R/library/grDevices/afm/p052024l.afm.gz +lib/R/library/grDevices/afm/pob_____.afm.gz +lib/R/library/grDevices/afm/pobi____.afm.gz +lib/R/library/grDevices/afm/poi_____.afm.gz +lib/R/library/grDevices/afm/por_____.afm.gz +lib/R/library/grDevices/afm/s050000l.afm.gz +lib/R/library/grDevices/afm/sy______.afm.gz +lib/R/library/grDevices/afm/tib_____.afm.gz +lib/R/library/grDevices/afm/tibi____.afm.gz +lib/R/library/grDevices/afm/tii_____.afm.gz +lib/R/library/grDevices/afm/tir_____.afm.gz lib/R/library/grDevices/enc/AdobeStd.enc lib/R/library/grDevices/enc/AdobeSym.enc lib/R/library/grDevices/enc/CP1250.enc @@ -571,6 +575,8 @@ lib/R/library/grDevices/help/paths.rds lib/R/library/grDevices/html/00Index.html lib/R/library/grDevices/html/R.css lib/R/library/grDevices/icc/srgb +lib/R/library/grDevices/icc/srgb.flate +lib/R/library/grDevices/libs/cairo.so lib/R/library/grDevices/libs/grDevices.so %%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo %%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/grDevices.mo @@ -615,6 +621,13 @@ lib/R/library/graphics/help/aliases.rds lib/R/library/graphics/help/graphics.rdb lib/R/library/graphics/help/graphics.rdx lib/R/library/graphics/help/paths.rds +lib/R/library/graphics/help/figures/mai.pdf +lib/R/library/graphics/help/figures/mai.png +lib/R/library/graphics/help/figures/oma.pdf +lib/R/library/graphics/help/figures/oma.png +lib/R/library/graphics/help/figures/pch.pdf +lib/R/library/graphics/help/figures/pch.png +lib/R/library/graphics/help/figures/pch.svg lib/R/library/graphics/html/00Index.html lib/R/library/graphics/html/R.css %%NLS%%lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo @@ -640,45 +653,44 @@ lib/R/library/grid/R/grid.rdb lib/R/library/grid/R/grid.rdx lib/R/library/grid/doc/changes.txt lib/R/library/grid/doc/displaylist.R -lib/R/library/grid/doc/displaylist.Snw +lib/R/library/grid/doc/displaylist.Rnw lib/R/library/grid/doc/displaylist.pdf lib/R/library/grid/doc/frame.R -lib/R/library/grid/doc/frame.Snw +lib/R/library/grid/doc/frame.Rnw lib/R/library/grid/doc/frame.pdf lib/R/library/grid/doc/grid.R -lib/R/library/grid/doc/grid.Snw -lib/R/library/grid/doc/grid.bib +lib/R/library/grid/doc/grid.Rnw lib/R/library/grid/doc/grid.pdf lib/R/library/grid/doc/grobs.R -lib/R/library/grid/doc/grobs.Snw +lib/R/library/grid/doc/grobs.Rnw lib/R/library/grid/doc/grobs.pdf lib/R/library/grid/doc/index.html lib/R/library/grid/doc/interactive.R -lib/R/library/grid/doc/interactive.Snw +lib/R/library/grid/doc/interactive.Rnw lib/R/library/grid/doc/interactive.pdf lib/R/library/grid/doc/locndimn.R -lib/R/library/grid/doc/locndimn.Snw +lib/R/library/grid/doc/locndimn.Rnw lib/R/library/grid/doc/locndimn.pdf lib/R/library/grid/doc/moveline.R -lib/R/library/grid/doc/moveline.Snw +lib/R/library/grid/doc/moveline.Rnw lib/R/library/grid/doc/moveline.pdf lib/R/library/grid/doc/nonfinite.R -lib/R/library/grid/doc/nonfinite.Snw +lib/R/library/grid/doc/nonfinite.Rnw lib/R/library/grid/doc/nonfinite.pdf lib/R/library/grid/doc/plotexample.R -lib/R/library/grid/doc/plotexample.Snw +lib/R/library/grid/doc/plotexample.Rnw lib/R/library/grid/doc/plotexample.pdf lib/R/library/grid/doc/rotated.R -lib/R/library/grid/doc/rotated.Snw +lib/R/library/grid/doc/rotated.Rnw lib/R/library/grid/doc/rotated.pdf lib/R/library/grid/doc/saveload.R -lib/R/library/grid/doc/saveload.Snw +lib/R/library/grid/doc/saveload.Rnw lib/R/library/grid/doc/saveload.pdf lib/R/library/grid/doc/sharing.R -lib/R/library/grid/doc/sharing.Snw +lib/R/library/grid/doc/sharing.Rnw lib/R/library/grid/doc/sharing.pdf lib/R/library/grid/doc/viewports.R -lib/R/library/grid/doc/viewports.Snw +lib/R/library/grid/doc/viewports.Rnw lib/R/library/grid/doc/viewports.pdf lib/R/library/grid/help/AnIndex lib/R/library/grid/help/aliases.rds @@ -863,6 +875,38 @@ lib/R/library/nnet/libs/nnet.so %%NLS%%lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo %%NLS%%lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo %%NLS%%lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo +lib/R/library/parallel/DESCRIPTION +lib/R/library/parallel/INDEX +lib/R/library/parallel/Meta/Rd.rds +lib/R/library/parallel/Meta/hsearch.rds +lib/R/library/parallel/Meta/links.rds +lib/R/library/parallel/Meta/nsInfo.rds +lib/R/library/parallel/Meta/package.rds +lib/R/library/parallel/Meta/vignette.rds +lib/R/library/parallel/NAMESPACE +lib/R/library/parallel/R/parallel +lib/R/library/parallel/R/parallel.rdb +lib/R/library/parallel/R/parallel.rdx +lib/R/library/parallel/doc/index.html +lib/R/library/parallel/doc/parallel.R +lib/R/library/parallel/doc/parallel.Rnw +lib/R/library/parallel/doc/parallel.pdf +lib/R/library/parallel/help/AnIndex +lib/R/library/parallel/help/aliases.rds +lib/R/library/parallel/help/parallel.rdb +lib/R/library/parallel/help/parallel.rdx +lib/R/library/parallel/help/paths.rds +lib/R/library/parallel/html/00Index.html +lib/R/library/parallel/html/R.css +lib/R/library/parallel/libs/parallel.so +%%NLS%%lib/R/library/parallel/po/de/LC_MESSAGES/R-parallel.mo +%%NLS%%lib/R/library/parallel/po/de/LC_MESSAGES/parallel.mo +%%NLS%%lib/R/library/parallel/po/en@quot/LC_MESSAGES/R-parallel.mo +%%NLS%%lib/R/library/parallel/po/en@quot/LC_MESSAGES/parallel.mo +%%NLS%%lib/R/library/parallel/po/fr/LC_MESSAGES/R-parallel.mo +%%NLS%%lib/R/library/parallel/po/fr/LC_MESSAGES/parallel.mo +%%NLS%%lib/R/library/parallel/po/ru/LC_MESSAGES/R-parallel.mo +%%NLS%%lib/R/library/parallel/po/ru/LC_MESSAGES/parallel.mo lib/R/library/rpart/DESCRIPTION lib/R/library/rpart/INDEX lib/R/library/rpart/Meta/Rd.rds @@ -1052,7 +1096,6 @@ lib/R/library/stats/libs/stats.so %%NLS%%lib/R/library/stats/po/tr/LC_MESSAGES/R-stats.mo %%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/R-stats.mo %%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/stats.mo -lib/R/library/survival/COPYING lib/R/library/survival/DESCRIPTION lib/R/library/survival/INDEX lib/R/library/survival/Meta/Rd.rds @@ -1221,10 +1264,10 @@ lib/R/share/R/REMOVE.R lib/R/share/R/examples-footer.R lib/R/share/R/examples-header.R lib/R/share/R/nspackloader.R -lib/R/share/R/packloader.R lib/R/share/R/tests-startup.R lib/R/share/encodings/Adobe-glyphlist lib/R/share/encodings/character-sets +lib/R/share/java/README lib/R/share/java/getsp.class lib/R/share/licenses/AGPL-3 lib/R/share/licenses/Artistic-1.0 @@ -1254,6 +1297,7 @@ lib/R/share/make/basepkg.mk lib/R/share/make/check.mk lib/R/share/make/clean.mk lib/R/share/make/config.mk +lib/R/share/make/lazycomp.mk lib/R/share/make/shlib.mk lib/R/share/make/vars.mk lib/R/share/make/winshlib.mk @@ -1271,27 +1315,21 @@ lib/R/share/texmf/tex/latex/ts1aer.fd lib/R/share/texmf/tex/latex/ts1aett.fd lib/R/share/texmf/tex/latex/upquote.sty %%LIBR%%libdata/pkgconfig/libR.pc -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf %%DOCSDIR%%/manual/R-FAQ.html -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf %%DOCSDIR%%/manual/R-admin.html -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-data.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf %%DOCSDIR%%/manual/R-data.html -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-exts.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf %%DOCSDIR%%/manual/R-exts.html -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-intro.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf %%DOCSDIR%%/manual/R-intro.html -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-ints.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf %%DOCSDIR%%/manual/R-ints.html -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-lang.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf %%DOCSDIR%%/manual/R-lang.html -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/QQ.eps -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ecdf.eps -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig11.eps -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig12.eps -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/hist.eps -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps -%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf @dirrm lib/R/share/texmf/tex/latex @dirrm lib/R/share/texmf/tex @dirrm lib/R/share/texmf/bibtex/bst @@ -1533,6 +1571,22 @@ lib/R/share/texmf/tex/latex/upquote.sty @dirrm lib/R/library/rpart/R @dirrm lib/R/library/rpart/Meta @dirrm lib/R/library/rpart +%%NLS%%@dirrm lib/R/library/parallel/po/ru/LC_MESSAGES +%%NLS%%@dirrm lib/R/library/parallel/po/ru +%%NLS%%@dirrm lib/R/library/parallel/po/fr/LC_MESSAGES +%%NLS%%@dirrm lib/R/library/parallel/po/fr +%%NLS%%@dirrm lib/R/library/parallel/po/en@quot/LC_MESSAGES +%%NLS%%@dirrm lib/R/library/parallel/po/en@quot +%%NLS%%@dirrm lib/R/library/parallel/po/de/LC_MESSAGES +%%NLS%%@dirrm lib/R/library/parallel/po/de +%%NLS%%@dirrm lib/R/library/parallel/po +@dirrm lib/R/library/parallel/libs +@dirrm lib/R/library/parallel/html +@dirrm lib/R/library/parallel/help +@dirrm lib/R/library/parallel/doc +@dirrm lib/R/library/parallel/R +@dirrm lib/R/library/parallel/Meta +@dirrm lib/R/library/parallel %%NLS%%@dirrm lib/R/library/nnet/po/fr/LC_MESSAGES %%NLS%%@dirrm lib/R/library/nnet/po/fr %%NLS%%@dirrm lib/R/library/nnet/po/en@quot/LC_MESSAGES @@ -1653,6 +1707,7 @@ lib/R/share/texmf/tex/latex/upquote.sty %%NLS%%@dirrm lib/R/library/graphics/po/de %%NLS%%@dirrm lib/R/library/graphics/po @dirrm lib/R/library/graphics/html +@dirrm lib/R/library/graphics/help/figures @dirrm lib/R/library/graphics/help @dirrm lib/R/library/graphics/demo @dirrm lib/R/library/graphics/R @@ -1705,11 +1760,8 @@ lib/R/share/texmf/tex/latex/upquote.sty @dirrm lib/R/library/datasets/html @dirrm lib/R/library/datasets/help @dirrm lib/R/library/datasets/data -@dirrm lib/R/library/datasets/R @dirrm lib/R/library/datasets/Meta @dirrm lib/R/library/datasets -%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN/LC_MESSAGES -%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN %%NLS%%@dirrm lib/R/library/compiler/po/ru/LC_MESSAGES %%NLS%%@dirrm lib/R/library/compiler/po/ru %%NLS%%@dirrm lib/R/library/compiler/po/pt_BR/LC_MESSAGES @@ -1733,6 +1785,11 @@ lib/R/share/texmf/tex/latex/upquote.sty @dirrm lib/R/library/codetools/R @dirrm lib/R/library/codetools/Meta @dirrm lib/R/library/codetools +%%NLS%%@dirrm lib/R/library/cluster/po/de/LC_MESSAGES +%%NLS%%@dirrm lib/R/library/cluster/po/de +%%NLS%%@dirrm lib/R/library/cluster/po/en@quot/LC_MESSAGES +%%NLS%%@dirrm lib/R/library/cluster/po/en@quot +%%NLS%%@dirrm lib/R/library/cluster/po @dirrm lib/R/library/cluster/libs @dirrm lib/R/library/cluster/html @dirrm lib/R/library/cluster/help @@ -1845,7 +1902,6 @@ lib/R/share/texmf/tex/latex/upquote.sty @dirrm lib/R/bin/exec @dirrm lib/R/bin @dirrmtry lib/R -%%PORTDOCS%%%%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images @dirrm %%DOCSDIR%%/manual @dirrm %%DOCSDIR%%/html @dirrm %%DOCSDIR%% diff --git a/math/ess/Makefile b/math/ess/Makefile index b84be9795df3..ef735d17ffd0 100644 --- a/math/ess/Makefile +++ b/math/ess/Makefile @@ -7,7 +7,7 @@ PORTNAME= ess PORTVERSION= 5.14 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math MASTER_SITES= http://ess.r-project.org/downloads/ess/ EXTRACT_SUFX= .tgz diff --git a/math/p5-Statistics-R/Makefile b/math/p5-Statistics-R/Makefile index 38a257b64694..43309cfc6464 100644 --- a/math/p5-Statistics-R/Makefile +++ b/math/p5-Statistics-R/Makefile @@ -7,6 +7,7 @@ PORTNAME= Statistics-R PORTVERSION= 0.23 +PORTREVISION= 1 CATEGORIES= math perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:FANGLY diff --git a/math/rkward-kde4/Makefile b/math/rkward-kde4/Makefile index e99f41b9e063..cbfeb16a1605 100644 --- a/math/rkward-kde4/Makefile +++ b/math/rkward-kde4/Makefile @@ -7,6 +7,7 @@ PORTNAME= rkward PORTVERSION= 0.5.7 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= SF/${PORTNAME}/Current_Stable_Releases PKGNAMESUFFIX= -kde4 diff --git a/math/rkward-kde4/pkg-plist b/math/rkward-kde4/pkg-plist index 3e26adb4fc26..fedd98c5c614 100644 --- a/math/rkward-kde4/pkg-plist +++ b/math/rkward-kde4/pkg-plist @@ -596,6 +596,7 @@ lib/R/library/rkward/Meta/Rd.rds lib/R/library/rkward/Meta/hsearch.rds lib/R/library/rkward/Meta/links.rds lib/R/library/rkward/Meta/package.rds +lib/R/library/rkward/NAMESPACE lib/R/library/rkward/R/rkward lib/R/library/rkward/R/rkward.rdb lib/R/library/rkward/R/rkward.rdx diff --git a/math/rkward/Makefile b/math/rkward/Makefile index 3a83073248cf..1dbfab10c0dc 100644 --- a/math/rkward/Makefile +++ b/math/rkward/Makefile @@ -7,7 +7,7 @@ PORTNAME= rkward DISTVERSION= 0.4.9a -PORTREVISION= 12 +PORTREVISION= 13 PORTEPOCH= 3 CATEGORIES= math MASTER_SITES= SF/${PORTNAME}/Historical_Releases/0.4.x_and_earlier/0.4.9a%20%28KDE3%29 diff --git a/math/rkward/pkg-plist b/math/rkward/pkg-plist index ac08da5655d9..9104b17e4046 100644 --- a/math/rkward/pkg-plist +++ b/math/rkward/pkg-plist @@ -474,6 +474,7 @@ share/icons/locolor/32x32/apps/rkward.png @cwd %%LOCALBASE%% lib/R/library/rkward/DESCRIPTION lib/R/library/rkward/INDEX +lib/R/library/rkward/NAMESPACE lib/R/library/rkward/Meta/Rd.rds lib/R/library/rkward/Meta/hsearch.rds lib/R/library/rkward/Meta/links.rds @@ -492,7 +493,6 @@ lib/R/library/rkward/libs/rkward.so @dirrm lib/R/library/rkward/libs @dirrm lib/R/library/rkward/html @dirrm lib/R/library/rkward/help -@dirrm lib/R/library/rkward/R-ex @dirrm lib/R/library/rkward/R @dirrm lib/R/library/rkward/Meta @dirrm lib/R/library/rkward diff --git a/math/rpy/Makefile b/math/rpy/Makefile index 1de876b18568..320db139f7e5 100644 --- a/math/rpy/Makefile +++ b/math/rpy/Makefile @@ -8,7 +8,7 @@ PORTNAME= rpy PORTVERSION= 1.0.3 -PORTREVISION= 19 +PORTREVISION= 20 CATEGORIES= math MASTER_SITES= SF diff --git a/math/rpy/pkg-plist b/math/rpy/pkg-plist index 32e675dfbb7a..f5f0fbe1a979 100644 --- a/math/rpy/pkg-plist +++ b/math/rpy/pkg-plist @@ -1,4 +1,4 @@ -%%PYTHON_SITELIBDIR%%/_rpy2132.so +%%PYTHON_SITELIBDIR%%/_rpy2140.so %%PYTHON_SITELIBDIR%%/rpy.py %%PYTHON_SITELIBDIR%%/rpy.pyc %%PYTHON_SITELIBDIR%%/rpy.pyo diff --git a/math/rpy2/Makefile b/math/rpy2/Makefile index 2dc00259bc86..c0ebd70f23d7 100644 --- a/math/rpy2/Makefile +++ b/math/rpy2/Makefile @@ -8,6 +8,7 @@ PORTNAME= rpy2 PORTVERSION= 2.2.4 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= CHEESESHOP \ SF |