diff options
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/py-macs2/Makefile | 40 | ||||
| -rw-r--r-- | biology/py-macs2/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-macs2/pkg-descr | 4 |
4 files changed, 0 insertions, 48 deletions
diff --git a/biology/Makefile b/biology/Makefile index 802b08222e63..43554eb9416e 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -183,7 +183,6 @@ SUBDIR += py-libnuml SUBDIR += py-libsedml SUBDIR += py-loompy - SUBDIR += py-macs2 SUBDIR += py-macs3 SUBDIR += py-mrcfile SUBDIR += py-multiqc diff --git a/biology/py-macs2/Makefile b/biology/py-macs2/Makefile deleted file mode 100644 index a3795d4921ed..000000000000 --- a/biology/py-macs2/Makefile +++ /dev/null @@ -1,40 +0,0 @@ -PORTNAME= macs2 -DISTVERSIONPREFIX= v -DISTVERSION= 2.2.9.1 -PORTREVISION= 3 -CATEGORIES= biology python -PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} - -MAINTAINER= jwb@FreeBSD.org -COMMENT= Identify transcription factor binding sites -WWW= https://github.com/taoliu/MACS - -LICENSE= BSD3CLAUSE -LICENSE_FILE= ${WRKSRC}/LICENSE - -DEPRECATED= Depends on expired lang/cython0 -EXPIRATION_DATE=2026-09-15 - -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}cykhash>0:devel/py-cykhash@${PY_FLAVOR} -TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ - bash:shells/bash - -USES= python shebangfix -USE_GITHUB= yes -USE_PYTHON= autoplist concurrent cython0 distutils - -GH_ACCOUNT= taoliu -GH_PROJECT= MACS -SHEBANG_FILES= test/cmdlinetest_update test/cmdlinetest test/prockreport - -post-stage: - ${STRIP_CMD} \ - ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \ - ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so - -do-test: install - @cd ${WRKSRC}/test && ./cmdlinetest tag - -.include <bsd.port.mk> diff --git a/biology/py-macs2/distinfo b/biology/py-macs2/distinfo deleted file mode 100644 index e6da44033e73..000000000000 --- a/biology/py-macs2/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -TIMESTAMP = 1691269587 -SHA256 (taoliu-MACS-v2.2.9.1_GH0.tar.gz) = 8e461dde82288280fe708cd4f5fec986fbf2da67b344f4dea5693af849549163 -SIZE (taoliu-MACS-v2.2.9.1_GH0.tar.gz) = 133109075 diff --git a/biology/py-macs2/pkg-descr b/biology/py-macs2/pkg-descr deleted file mode 100644 index 0310d2e092f8..000000000000 --- a/biology/py-macs2/pkg-descr +++ /dev/null @@ -1,4 +0,0 @@ -MACS is a tool for chromatin immunoprecipitation (ChIP) sequence analysis. -MACS empirically models the length of the sequenced ChIP fragments, which -tend to be shorter than sonication or library construction size estimates, -and uses it to improve the spatial resolution of predicted binding sites. |