diff options
| -rw-r--r-- | math/Makefile | 1 | ||||
| -rw-r--r-- | math/scorec-core/Makefile | 49 | ||||
| -rw-r--r-- | math/scorec-core/distinfo | 5 | ||||
| -rw-r--r-- | math/scorec-core/files/patch-pumi_pumi__sys.cc | 11 | ||||
| -rw-r--r-- | math/scorec-core/pkg-descr | 20 | ||||
| -rw-r--r-- | math/scorec-core/pkg-plist | 260 |
6 files changed, 346 insertions, 0 deletions
diff --git a/math/Makefile b/math/Makefile index 9808e93301c4..9d179022eabf 100644 --- a/math/Makefile +++ b/math/Makefile @@ -1083,6 +1083,7 @@ SUBDIR += scalapackfx SUBDIR += scilab SUBDIR += scilab-toolbox-swt + SUBDIR += scorec-core SUBDIR += scs SUBDIR += sdpa SUBDIR += secp256k1 diff --git a/math/scorec-core/Makefile b/math/scorec-core/Makefile new file mode 100644 index 000000000000..278db822f2bb --- /dev/null +++ b/math/scorec-core/Makefile @@ -0,0 +1,49 @@ +PORTNAME= scorec-core +DISTVERSIONPREFIX= v +DISTVERSION= 2.2.7-55 +DISTVERSIONSUFFIX= -g83113372 +CATEGORIES= math + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Parallel finite element unstructured meshes +WWW= https://github.com/SCOREC/core + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= \ + libepoll-shim.so:devel/libepoll-shim \ + libfabric.so:net/libfabric \ + libhwloc.so:devel/hwloc2 \ + libjson-c.so:devel/json-c \ + libze_loader.so:devel/level-zero + +USES= cmake:testing compiler:c++11-lang pkgconfig +USE_LDCONFIG= yes + +USE_GITHUB= yes +GH_ACCOUNT= SCOREC +GH_PROJECT= core +GH_TUPLE= SCOREC:pumi-meshes:7b84de7:meshes/pumi-meshes + +CFLAGS+= ${MPI_CFLAGS} +CXXFLAGS+= ${MPI_CFLAGS} +LDFLAGS+= ${MPI_LIBS} + +CMAKE_ON= BUILD_SHARED_LIBS +CMAKE_TESTING_ON= IS_TESTING # some tests fail possibly because they need a larger MPI cluster + +OPTIONS_DEFINE= FORTRAN +OPTIONS_SINGLE= MPI +OPTIONS_SINGLE_MPI= MPICH OPENMPI +OPTIONS_DEFAULT= FORTRAN MPICH +OPTIONS_SUB= yes + +FORTRAN_USES= fortran +FORTRAN_CMAKE_BOOL= PUMI_FORTRAN_INTERFACE + +MPICH_USES= mpi:mpich + +OPENMPI_USES= mpi:openmpi + +.include <bsd.port.mk> diff --git a/math/scorec-core/distinfo b/math/scorec-core/distinfo new file mode 100644 index 000000000000..74d0e25e6a5f --- /dev/null +++ b/math/scorec-core/distinfo @@ -0,0 +1,5 @@ +TIMESTAMP = 1670233469 +SHA256 (SCOREC-core-v2.2.7-55-g83113372_GH0.tar.gz) = 0ee9c69b6dc3f0e8c38fca945112e3d81ec66f3a8e47a2474aafd695e55c3e33 +SIZE (SCOREC-core-v2.2.7-55-g83113372_GH0.tar.gz) = 1210395 +SHA256 (SCOREC-pumi-meshes-7b84de7_GH0.tar.gz) = 72f552318dac42aeebc6f1a2f4e7f7de4eaee69da7a32026d2b1e4081c28ed71 +SIZE (SCOREC-pumi-meshes-7b84de7_GH0.tar.gz) = 33991978 diff --git a/math/scorec-core/files/patch-pumi_pumi__sys.cc b/math/scorec-core/files/patch-pumi_pumi__sys.cc new file mode 100644 index 000000000000..2b732b80d0a1 --- /dev/null +++ b/math/scorec-core/files/patch-pumi_pumi__sys.cc @@ -0,0 +1,11 @@ +--- pumi/pumi_sys.cc.orig 2022-12-05 09:50:18 UTC ++++ pumi/pumi_sys.cc +@@ -98,6 +98,8 @@ double pumi_getMem() + task_info(current_task(), TASK_BASIC_INFO, (task_info_t)&t_info, &t_info_count); + size_t size = (resident ? t_info.resident_size : t_info.virtual_size); + return (double)size/M; ++#elif defined(__FreeBSD__) ++ return (double)20000.; // TODO default to 20GB for now + #elif defined(__bgq__) + size_t heap; + Kernel_GetMemorySize(KERNEL_MEMSIZE_HEAP, &heap); diff --git a/math/scorec-core/pkg-descr b/math/scorec-core/pkg-descr new file mode 100644 index 000000000000..5d65d20e15bd --- /dev/null +++ b/math/scorec-core/pkg-descr @@ -0,0 +1,20 @@ +The SCOREC Core is a set of C/C++ libraries for unstructured mesh simulations +on supercomputers. + +This project contains: +* PUMI: parallel unstructured mesh infrastructure API User's Guide +* PCU: Communication and file IO built on MPI +* APF: Abstract definition of meshes, fields, and related operations +* GMI: Common interface for geometric modeling kernels +* MDS: Compact but flexible array-based mesh data structure +* PARMA: Scalable partitioning and load balancing procedures +* SPR: Superconvergent Patch Recovery error estimator +* MA: Anisotropic mixed mesh adaptation and solution transfer +* SAM: Sizing anisotropic meshes +* STK: Conversion from APF meshes to Sandia's STK meshes +* ZOLTAN: Interface to run Sandia's Zoltan code on APF meshes +* PHASTA: Tools and file formats related to the PHASTA fluid solver +* MTH: Math containers and routines +* CRV: Support for curved meshes with Bezier Shapes +* PYCORE: Python Wrappers +* REE: Residual based implicit error estimator diff --git a/math/scorec-core/pkg-plist b/math/scorec-core/pkg-plist new file mode 100644 index 000000000000..db8a32f613bf --- /dev/null +++ b/math/scorec-core/pkg-plist @@ -0,0 +1,260 @@ +bin/adaptLvlSetLoop +bin/balance +bin/box +bin/chef +bin/chefReadUrPrep +bin/chefStream +bin/classifyThenAdapt +bin/collapse +bin/condense +bin/describe +bin/extrude +bin/fixDisconnected +bin/fixlayer +bin/fixshape +bin/from_ansys +bin/from_gmsh +bin/from_neper +bin/from_ugrid +bin/icesheet +bin/intrude +bin/measureAnisoStats +bin/measureIsoStats +bin/mkmodel +bin/mktopomodel +bin/modelInfo +bin/nektar_align +bin/print_pumipic_partition +bin/refine2x +bin/render +bin/renderClass +bin/render_ascii +bin/reorder +bin/repartition +bin/scale +bin/serialize +bin/split +bin/tetrahedronize +bin/threshold +bin/uniform +bin/verify +bin/visualizeAnisoSizes +bin/zsplit +include/GenIterator.h +include/GenTag.h +include/PCU.h +include/agm.h +include/apf.h +include/apf2mth.h +include/apfArray.h +include/apfBox.h +include/apfCavityOp.h +include/apfConvert.h +include/apfDynamicArray.h +include/apfDynamicMatrix.h +include/apfDynamicVector.h +include/apfField.h +include/apfFieldData.h +include/apfGeometry.h +include/apfMDS.h +include/apfMIS.h +include/apfMatrix.h +include/apfMesh.h +include/apfMesh2.h +include/apfMixedNumbering.h +include/apfNew.h +include/apfNumbering.h +include/apfNumberingClass.h +include/apfPartition.h +include/apfShape.h +include/apfVector.h +include/apfZoltan.h +include/canArray.h +include/canNewArray.h +include/chef.h +%%FORTRAN%%include/core_mesh_quality.mod +%%FORTRAN%%include/core_rigid_body.mod +%%FORTRAN%%include/core_snap.mod +include/crv.h +include/gmi.h +include/gmi_analytic.h +include/gmi_base.h +include/gmi_lookup.h +include/gmi_mesh.h +include/gmi_null.h +include/lionBase64.h +include/lionCompress.h +include/lionPrint.h +include/mPartEntityContainer.h +include/ma.h +include/maDBG.h +include/maExtrude.h +include/maInput.h +include/maMesh.h +include/maShape.h +include/maSize.h +include/maSolutionTransfer.h +include/maStats.h +include/maTables.h +include/mth.h +include/mthAD.h +include/mthMatrix.h +include/mthQR.h +include/mthTensor.h +include/mthVector.h +include/mth_def.h +include/parma.h +include/pcu_io.h +include/pcu_util.h +include/ph.h +include/phBC.h +include/phInput.h +include/phastaChef.h +include/phiotimer.h +%%FORTRAN%%include/phiotimer.mod +include/phstream.h +include/pumi.h +include/pumi_errorcode.h +include/pumi_list.h +include/pumi_version.h +include/ree.h +include/reel.h +include/sam.h +include/samElementCount.h +include/samSz.h +include/spr.h +lib/cmake/SCOREC/SCORECConfig.cmake +lib/cmake/SCOREC/SCORECConfigVersion.cmake +lib/cmake/SCOREC/adaptLvlSetLoop-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/adaptLvlSetLoop-target.cmake +lib/cmake/SCOREC/apf-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/apf-target.cmake +lib/cmake/SCOREC/apf_zoltan-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/apf_zoltan-target.cmake +lib/cmake/SCOREC/balance-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/balance-target.cmake +lib/cmake/SCOREC/box-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/box-target.cmake +lib/cmake/SCOREC/can-target.cmake +lib/cmake/SCOREC/chef-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/chef-target.cmake +lib/cmake/SCOREC/chefReadUrPrep-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/chefReadUrPrep-target.cmake +lib/cmake/SCOREC/chefStream-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/chefStream-target.cmake +lib/cmake/SCOREC/classifyThenAdapt-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/classifyThenAdapt-target.cmake +lib/cmake/SCOREC/collapse-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/collapse-target.cmake +lib/cmake/SCOREC/condense-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/condense-target.cmake +lib/cmake/SCOREC/core-target.cmake +lib/cmake/SCOREC/crv-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/crv-target.cmake +lib/cmake/SCOREC/describe-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/describe-target.cmake +lib/cmake/SCOREC/extrude-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/extrude-target.cmake +lib/cmake/SCOREC/fixDisconnected-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/fixDisconnected-target.cmake +lib/cmake/SCOREC/fixlayer-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/fixlayer-target.cmake +lib/cmake/SCOREC/fixshape-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/fixshape-target.cmake +lib/cmake/SCOREC/from_ansys-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/from_ansys-target.cmake +lib/cmake/SCOREC/from_gmsh-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/from_gmsh-target.cmake +lib/cmake/SCOREC/from_neper-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/from_neper-target.cmake +lib/cmake/SCOREC/from_ugrid-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/from_ugrid-target.cmake +lib/cmake/SCOREC/gmi-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/gmi-target.cmake +lib/cmake/SCOREC/icesheet-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/icesheet-target.cmake +lib/cmake/SCOREC/intrude-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/intrude-target.cmake +lib/cmake/SCOREC/lion-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/lion-target.cmake +lib/cmake/SCOREC/ma-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/ma-target.cmake +lib/cmake/SCOREC/mds-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/mds-target.cmake +lib/cmake/SCOREC/measureAnisoStats-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/measureAnisoStats-target.cmake +lib/cmake/SCOREC/measureIsoStats-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/measureIsoStats-target.cmake +lib/cmake/SCOREC/mkmodel-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/mkmodel-target.cmake +lib/cmake/SCOREC/mktopomodel-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/mktopomodel-target.cmake +lib/cmake/SCOREC/modelInfo-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/modelInfo-target.cmake +lib/cmake/SCOREC/mth-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/mth-target.cmake +lib/cmake/SCOREC/nektar_align-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/nektar_align-target.cmake +lib/cmake/SCOREC/parma-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/parma-target.cmake +lib/cmake/SCOREC/pcu-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/pcu-target.cmake +lib/cmake/SCOREC/ph-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/ph-target.cmake +lib/cmake/SCOREC/print_pumipic_partition-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/print_pumipic_partition-target.cmake +lib/cmake/SCOREC/pumi-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/pumi-target.cmake +lib/cmake/SCOREC/ree-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/ree-target.cmake +lib/cmake/SCOREC/refine2x-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/refine2x-target.cmake +lib/cmake/SCOREC/render-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/render-target.cmake +lib/cmake/SCOREC/renderClass-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/renderClass-target.cmake +lib/cmake/SCOREC/render_ascii-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/render_ascii-target.cmake +lib/cmake/SCOREC/reorder-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/reorder-target.cmake +lib/cmake/SCOREC/repartition-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/repartition-target.cmake +lib/cmake/SCOREC/sam-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/sam-target.cmake +lib/cmake/SCOREC/scale-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/scale-target.cmake +lib/cmake/SCOREC/serialize-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/serialize-target.cmake +lib/cmake/SCOREC/split-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/split-target.cmake +lib/cmake/SCOREC/spr-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/spr-target.cmake +lib/cmake/SCOREC/tetrahedronize-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/tetrahedronize-target.cmake +lib/cmake/SCOREC/threshold-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/threshold-target.cmake +lib/cmake/SCOREC/uniform-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/uniform-target.cmake +lib/cmake/SCOREC/verify-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/verify-target.cmake +lib/cmake/SCOREC/visualizeAnisoSizes-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/visualizeAnisoSizes-target.cmake +lib/cmake/SCOREC/zsplit-target-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/SCOREC/zsplit-target.cmake +lib/libapf.so +lib/libapf_zoltan.so +lib/libcrv.so +lib/libgmi.so +lib/liblion.so +lib/libma.so +lib/libmds.so +lib/libmth.so +lib/libparma.so +lib/libpcu.so +lib/libph.so +lib/libpumi.so +lib/libree.so +lib/libsam.so +lib/libspr.so +share/testdata/pipe.dmg +share/testdata/pipe0.smb |