diff options
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/py-hcluster/Makefile | 23 | ||||
| -rw-r--r-- | science/py-hcluster/distinfo | 3 | ||||
| -rw-r--r-- | science/py-hcluster/files/patch-setup.py | 12 | ||||
| -rw-r--r-- | science/py-hcluster/pkg-descr | 14 | ||||
| -rw-r--r-- | science/py-hcluster/pkg-plist | 8 |
6 files changed, 61 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index cbba936942d3..ca306d307240 100644 --- a/science/Makefile +++ b/science/Makefile @@ -100,6 +100,7 @@ SUBDIR += pcp SUBDIR += pnetcdf SUBDIR += psi3 + SUBDIR += py-hcluster SUBDIR += py-openbabel SUBDIR += py-paida SUBDIR += py-scipy diff --git a/science/py-hcluster/Makefile b/science/py-hcluster/Makefile new file mode 100644 index 000000000000..fb5236dabc53 --- /dev/null +++ b/science/py-hcluster/Makefile @@ -0,0 +1,23 @@ +# New ports collection makefile for: py-hcluster +# Date created: 2008-09-04 +# Whom: Wen Heping <wenheping@gmail.com> +# +# $FreeBSD$ +# + +PORTNAME= hcluster +PORTVERSION= 0.1.9 +CATEGORIES= science python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= wenheping@gmail.com +COMMENT= A Hierarchical Clustering Package For Scipy + +BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy +RUN_DEPENDS= ${BUILD_DEPENDS} + +USE_PYTHON= yes +USE_PYDISTUTILS= yes + +.include <bsd.port.mk> diff --git a/science/py-hcluster/distinfo b/science/py-hcluster/distinfo new file mode 100644 index 000000000000..ddecba63ba31 --- /dev/null +++ b/science/py-hcluster/distinfo @@ -0,0 +1,3 @@ +MD5 (hcluster-0.1.9.tar.gz) = 1d24fd81648c8b154bca37b2fa91a274 +SHA256 (hcluster-0.1.9.tar.gz) = eb24c9ae0f2c65a2c2845d84350a4660af32fa36714a4ecca11c9085ae9d9bfa +SIZE (hcluster-0.1.9.tar.gz) = 42642 diff --git a/science/py-hcluster/files/patch-setup.py b/science/py-hcluster/files/patch-setup.py new file mode 100644 index 000000000000..620dff7de3df --- /dev/null +++ b/science/py-hcluster/files/patch-setup.py @@ -0,0 +1,12 @@ +--- setup.py.orig 2008-09-21 22:20:16.000000000 +0800 ++++ setup.py 2008-09-21 22:20:34.000000000 +0800 +@@ -33,7 +33,8 @@ + print string.join(l, '\n') + # Prompt the user with a list of selections. + while not (s >= 1 and s <= len(valid_paths)): +- s = input('Selection [default=1]:' % s) ++# s = input('Selection [default=1]:' % s) ++ s=1 + if s == '': + s = 1 + else: diff --git a/science/py-hcluster/pkg-descr b/science/py-hcluster/pkg-descr new file mode 100644 index 000000000000..650a24f72117 --- /dev/null +++ b/science/py-hcluster/pkg-descr @@ -0,0 +1,14 @@ +py-hcluster library provides Python functions for +agglomerative clustering. Its features include +* generating hierarchical clusters from distance matrices +* computing distance matrices from observation vectors +* computing statistics on clusters +* cutting linkages to generate flat clusters +* and visualizing clusters with dendrograms. + +The interface is very similar to MATLAB's Statistics +Toolbox API to make code easier to port from MATLAB to +Python/Numpy. The core implementation of this library +is in C for efficiency. + +WWW: http://code.google.com/p/scipy-cluster/ diff --git a/science/py-hcluster/pkg-plist b/science/py-hcluster/pkg-plist new file mode 100644 index 000000000000..71b2025b9d28 --- /dev/null +++ b/science/py-hcluster/pkg-plist @@ -0,0 +1,8 @@ +%%PYTHON_SITELIBDIR%%/_cluster_wrap.so +%%PYTHON_SITELIBDIR%%/hcluster/__init__.py +%%PYTHON_SITELIBDIR%%/hcluster/__init__.pyc +%%PYTHON_SITELIBDIR%%/hcluster/__init__.pyo +%%PYTHON_SITELIBDIR%%/hcluster/cluster.py +%%PYTHON_SITELIBDIR%%/hcluster/cluster.pyc +%%PYTHON_SITELIBDIR%%/hcluster/cluster.pyo +@dirrm %%PYTHON_SITELIBDIR%%/hcluster |