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-rw-r--r--biology/bwa/files/patch-Makefile11
1 files changed, 11 insertions, 0 deletions
diff --git a/biology/bwa/files/patch-Makefile b/biology/bwa/files/patch-Makefile
new file mode 100644
index 000000000000..e7d704d5e0b3
--- /dev/null
+++ b/biology/bwa/files/patch-Makefile
@@ -0,0 +1,11 @@
+--- Makefile.orig 2014-05-19 13:11:41 UTC
++++ Makefile
+@@ -1,6 +1,6 @@
+-CC= gcc
++CC?= gcc
+ #CC= clang --analyze
+-CFLAGS= -g -Wall -Wno-unused-function -O2
++CFLAGS?= -g -Wall -Wno-unused-function -O2
+ WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS
+ AR= ar
+ DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC)