diff options
Diffstat (limited to 'biology/dsr-pdb')
| -rw-r--r-- | biology/dsr-pdb/Makefile | 8 | ||||
| -rw-r--r-- | biology/dsr-pdb/files/patch-lib_Makefile.in | 13 | ||||
| -rw-r--r-- | biology/dsr-pdb/pkg-descr | 2 |
3 files changed, 19 insertions, 4 deletions
diff --git a/biology/dsr-pdb/Makefile b/biology/dsr-pdb/Makefile index 873e2c2a4e12..a84b48dd8241 100644 --- a/biology/dsr-pdb/Makefile +++ b/biology/dsr-pdb/Makefile @@ -1,6 +1,6 @@ PORTNAME= dsr-pdb DISTVERSION= 1.0.3 -PORTREVISION= 5 +PORTREVISION= 12 CATEGORIES= biology MASTER_SITES= https://graphics.stanford.edu/~drussel/ DISTNAME= ${PORTNAME} @@ -8,16 +8,20 @@ DIST_SUBDIR= ${PORTNAME}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Simple C++ PDB reader (reads the protein description format) +WWW= https://graphics.stanford.edu/~drussel/pdb/ LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING.txt +BROKEN_aarch64= ld: error: undefined symbol: .mcount (see bug#262709) + LIB_DEPENDS= libboost_program_options.so:devel/boost-libs USES= compiler:c++11-lang gmake libtool localbase:ldflags tar:tgz -GNU_CONFIGURE= yes USE_LDCONFIG= yes +GNU_CONFIGURE= yes + WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} CXXFLAGS+= -fPIC --std=c++11 # libboost_program_options.so isn't found without --std=c++11 diff --git a/biology/dsr-pdb/files/patch-lib_Makefile.in b/biology/dsr-pdb/files/patch-lib_Makefile.in new file mode 100644 index 000000000000..58a5ed2003b5 --- /dev/null +++ b/biology/dsr-pdb/files/patch-lib_Makefile.in @@ -0,0 +1,13 @@ +- workaround for https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=262709 + +--- lib/Makefile.in.orig 2022-03-22 00:02:00 UTC ++++ lib/Makefile.in +@@ -180,7 +180,7 @@ sysconfdir = @sysconfdir@ + target_alias = @target_alias@ + lib_LTLIBRARIES = libdsrpdb.la + noinst_HEADERS = pdb_utils.h Residue_data.h +-AM_CPPFLAGS = -I../include -pg ++AM_CPPFLAGS = -I../include + libdsrpdb_la_SOURCES = Residue.cc Protein.cc Residue_data.cc Protein_pdb.cc pdb_utils.cc Model.cc PDB.cc align.cc distance.cc Error_logger.cc + libdsrpdb_la_LDFLAGS = -static + all: all-am diff --git a/biology/dsr-pdb/pkg-descr b/biology/dsr-pdb/pkg-descr index 4cc497313c13..09bf048c3180 100644 --- a/biology/dsr-pdb/pkg-descr +++ b/biology/dsr-pdb/pkg-descr @@ -8,5 +8,3 @@ protein from/to a pdb file (which must have only one chain, but can have multiple models). The second, through the PDB class can handle pdb files with multiple models and herogens (although these are just passed through and not currently interpreted). - -WWW: https://graphics.stanford.edu/~drussel/pdb/ |