diff options
Diffstat (limited to 'biology/gcta/Makefile')
| -rw-r--r-- | biology/gcta/Makefile | 42 |
1 files changed, 24 insertions, 18 deletions
diff --git a/biology/gcta/Makefile b/biology/gcta/Makefile index f3ae8d589b4a..5599f5c22fee 100644 --- a/biology/gcta/Makefile +++ b/biology/gcta/Makefile @@ -1,34 +1,40 @@ PORTNAME= gcta -DISTVERSION= 1.26.0 -PORTREVISION= 4 +DISTVERSIONPREFIX= v +DISTVERSION= 1.94.1 CATEGORIES= biology -MASTER_SITES= https://cnsgenomics.com/software/gcta/pre_gcta/:main \ - https://gitlab.com/libeigen/eigen/-/archive/${EIGEN_VERSION}/:eigen -DISTFILES= ${PORTNAME}_${DISTVERSION}_src${EXTRACT_SUFX}:main \ - eigen-${EIGEN_VERSION}.tar.gz:eigen MAINTAINER= jwb@FreeBSD.org COMMENT= Genome-wide Complex Trait Analysis WWW= https://cnsgenomics.com/software/gcta/index.html LICENSE= GPLv3 -LICENSE_FILE= ${WRKSRC}/GNU_General_Public_License_v3.txt +LICENSE_FILE= ${WRKSRC}/LICENSE -LIB_DEPENDS= libopenblas.so:math/openblas +BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ + spectra>0:math/spectra +LIB_DEPENDS= libgsl.so:math/gsl \ + libopenblas.so:math/openblas \ + libsqlite3.so:databases/sqlite3 \ + libzstd.so:archivers/zstd -USES= compiler:c++11-lang dos2unix gmake localbase:ldflags zip +USES= cmake eigen:3 localbase:ldflags +USE_GITHUB= yes -CXXFLAGS+= -I${WRKDIR}/eigen-${EIGEN_VERSION} -fopenmp -LDFLAGS+= -lopenblas +GH_ACCOUNT= jianyangqt +GH_TUPLE= zhilizheng:plink-ng:3744540:plink/submods/plink-ng -INSTALL_TARGET= install-strip -PLIST_FILES= bin/gcta +CONFIGURE_ENV+= EIGEN3_INCLUDE_DIR=${LOCALBASE}/include/eigen3 \ + BOOST_INCLUDE_DIR=${LOCALBASE}/include/boost \ + OPENBLAS=${LOCALBASE} \ + SPECTRA_INCLUDE_DIR=${LOCALBASE}/include/Spectra -EIGEN_VERSION= 3.3.9 +LDFLAGS+= -fopenmp -do-extract: - @${UNZIP_NATIVE_CMD} -d ${WRKSRC} ${DISTDIR}/${PORTNAME}_${DISTVERSION}_src${EXTRACT_SUFX} - @cd ${WRKDIR} && \ - ${TAR} xzf ${DISTDIR}/eigen-${EIGEN_VERSION}.tar.gz +PLIST_FILES= bin/gcta64 bin/gcta + +do-install: + @${MKDIR} ${STAGEDIR}${PREFIX}/bin + ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/gcta64 ${STAGEDIR}${PREFIX}/bin + ${RLN} ${STAGEDIR}${PREFIX}/bin/gcta64 ${STAGEDIR}${PREFIX}/bin/gcta .include <bsd.port.mk> |