diff options
Diffstat (limited to 'biology/p5-BioPerl/files/patch-Build.PL')
| -rw-r--r-- | biology/p5-BioPerl/files/patch-Build.PL | 99 |
1 files changed, 99 insertions, 0 deletions
diff --git a/biology/p5-BioPerl/files/patch-Build.PL b/biology/p5-BioPerl/files/patch-Build.PL new file mode 100644 index 000000000000..4f890bf60809 --- /dev/null +++ b/biology/p5-BioPerl/files/patch-Build.PL @@ -0,0 +1,99 @@ +--- Build.PL.orig 2009-09-30 00:33:45.000000000 +0800 ++++ Build.PL 2009-12-01 10:25:51.000000000 +0800 +@@ -187,7 +187,6 @@ + }, + + build_requires => { +- 'CPAN' => 1.81, + 'Module::Build' => 0.2805, + 'Test::Harness' => 2.62, + 'Test::Most' => 0, +@@ -376,86 +375,8 @@ + + sub prompt_for_biodb { + my $accept = shift; +- my $proceed = $accept ? 0 : $build->y_n("Do you want to run the Bio::DB::GFF or ". +- "Bio::DB::SeqFeature::Store live database tests? ". +- "y/n", 'n'); +- +- if ($proceed) { +- my @driver_choices; +- foreach my $poss ('SQLite', 'mysql', 'Pg', 'Oracle') { +- if (grep {/$poss/i} @drivers) { +- my $choice = $poss; +- $choice =~ s/^(.)/[$1]/; +- push(@driver_choices, $choice); +- } +- } +- +- my $driver; +- if (@driver_choices > 1) { +- my ($default) = $driver_choices[0] =~ /\[(.)/; +- $driver = $build->prompt("Which database driver should be used? ".join(" ", @driver_choices), $default); +- } +- else { +- ($driver) = $driver_choices[0] =~ /\[(.)/; +- } +- if ($driver =~ /^[mM]/) { +- $driver = 'mysql'; +- } +- elsif ($driver =~ /^[pP]/) { +- $driver = 'Pg'; +- } +- elsif ($driver =~ /^[oO]/) { +- $driver = 'Oracle'; +- } +- elsif ($driver =~ /^[sS]/) { +- $driver = 'SQLite'; +- } +- +- my $test_db = $build->prompt("Which database should I use for testing the $driver driver?\n". +- "This database should already be present but doesn't have to ". +- "be preloaded for any schema", 'test'); +- my $test_host = $build->prompt("On which host is database '$test_db' running (hostname, ip address or host:port)", 'localhost'); +- my $test_user = $build->prompt("User name for connecting to database '$test_db'?", 'undef'); +- my $test_pass = $build->prompt("Password for connecting to database '$test_db'?", 'undef'); +- +- my $use_host = 1; +- if ($test_host eq 'undef' || $test_host eq 'localhost') { +- $use_host = 0; +- } +- +- my $test_dsn; +- if ($driver eq 'Pg' || $driver eq 'SQLite') { +- $test_dsn = "dbi:$driver:dbname=$test_db"; +- $mysql_ok = 0; +- } +- else { +- $test_dsn = "dbi:$driver:database=$test_db"; +- $mysql_ok = 0; +- } +- if ($use_host) { +- $test_dsn .= ";host=$test_host"; +- } +- +- $build->notes(dbd_driver => $driver); +- $build->notes(test_db => $test_db); +- $build->notes(test_host => $test_host); +- $build->notes(test_user => $test_user eq 'undef' ? undef : $test_user); +- $build->notes(test_pass => $test_pass eq 'undef' ? undef : $test_pass); +- $build->notes(test_dsn => $test_dsn); +- +- $build->log_info(" - will run tests with database driver '$driver' and these settings:\n", +- " Database $test_db\n", +- " Host $test_host\n", +- " DSN $test_dsn\n", +- " User $test_user\n", +- " Password $test_pass\n"); +- $build->log_info(" - will not run the BioDBSeqFeature live ". +- "database tests (requires MySQL or Pg driver)\n") unless ($driver eq 'mysql' or $driver eq 'Pg'); +- } +- else { +- $build->log_info(" - will not run the BioDBGFF or BioDBSeqFeature live database tests\n"); +- } +- ++ my $proceed = 0; ++ $build->log_info(" - will not run the BioDBGFF or BioDBSeqFeature live database tests\n"); + $build->log_info("\n"); + return $proceed; + } |