diff options
Diffstat (limited to 'science')
-rw-r--r-- | science/csvtk/Makefile | 2 | ||||
-rw-r--r-- | science/geant4/Makefile | 4 | ||||
-rw-r--r-- | science/geant4/distinfo | 10 | ||||
-rw-r--r-- | science/geant4/pkg-plist | 72 | ||||
-rw-r--r-- | science/mmg/Makefile | 12 | ||||
-rw-r--r-- | science/mmg/files/patch-CMakeLists.txt | 14 | ||||
-rw-r--r-- | science/mmg/files/patch-git__log__mmg.h | 9 | ||||
-rw-r--r-- | science/molgif/Makefile | 2 | ||||
-rw-r--r-- | science/py-hoomd-blue/Makefile | 2 | ||||
-rw-r--r-- | science/py-libpysal/Makefile | 9 | ||||
-rw-r--r-- | science/py-libpysal/pkg-descr | 2 | ||||
-rw-r--r-- | science/tfel/Makefile | 2 |
12 files changed, 46 insertions, 94 deletions
diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile index e7d07f4916c5..8835b11b136d 100644 --- a/science/csvtk/Makefile +++ b/science/csvtk/Makefile @@ -1,7 +1,7 @@ PORTNAME= csvtk DISTVERSIONPREFIX= v DISTVERSION= 0.30.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MAINTAINER= jwb@FreeBSD.org diff --git a/science/geant4/Makefile b/science/geant4/Makefile index 25e04979522b..7a63a4c11349 100644 --- a/science/geant4/Makefile +++ b/science/geant4/Makefile @@ -1,6 +1,6 @@ PORTNAME= geant4 DISTVERSIONPREFIX= v -DISTVERSION= 11.2.1 +DISTVERSION= 11.2.2 CATEGORIES= science parallel devel cad MASTER_SITES= https://cern.ch/geant4-data/releases/ \ https://cern.ch/geant4-data/datasets/:data @@ -57,7 +57,7 @@ G4ABLA_VERSION= 3.3 G4EMLOW_VERSION= 8.5 G4ENSDFSTATE_VERSION= 2.3 G4INCL_VERSION= 1.2 -G4NDL_VERSION= 4.7 +G4NDL_VERSION= 4.7.1 G4PARTICLEXS_VERSION= 4.0 G4PhotonEvaporation_VERSION= 5.7 G4PII_VERSION= 1.3 diff --git a/science/geant4/distinfo b/science/geant4/distinfo index 3eeb738b7b46..2a5af3f4e6c3 100644 --- a/science/geant4/distinfo +++ b/science/geant4/distinfo @@ -1,6 +1,6 @@ -TIMESTAMP = 1716329706 -SHA256 (geant4/geant4-v11.2.1.tar.gz) = 835db6543d5cb2e801675958965be96877f66d6907bb521954b598b785deae5e -SIZE (geant4/geant4-v11.2.1.tar.gz) = 36631774 +TIMESTAMP = 1719567320 +SHA256 (geant4/geant4-v11.2.2.tar.gz) = d24f65735b8a0a039c00f9434991e99ef119b86c510d0f2ab21155db82a3491d +SIZE (geant4/geant4-v11.2.2.tar.gz) = 36649158 SHA256 (geant4/G4ABLA.3.3.tar.gz) = 1e041b3252ee9cef886d624f753e693303aa32d7e5ef3bba87b34f36d92ea2b1 SIZE (geant4/G4ABLA.3.3.tar.gz) = 170253 SHA256 (geant4/G4EMLOW.8.5.tar.gz) = 66baca49ac5d45e2ac10c125b4fb266225e511803e66981909ce9cd3e9bcef73 @@ -9,8 +9,8 @@ SHA256 (geant4/G4ENSDFSTATE.2.3.tar.gz) = 9444c5e0820791abd3ccaace105b0e47790fad SIZE (geant4/G4ENSDFSTATE.2.3.tar.gz) = 290745 SHA256 (geant4/G4INCL.1.2.tar.gz) = f880b16073ee0a92d7494f3276a6d52d4de1d3677a0d4c7c58700396ed0e1a7e SIZE (geant4/G4INCL.1.2.tar.gz) = 98438 -SHA256 (geant4/G4NDL.4.7.tar.gz) = 7e7d3d2621102dc614f753ad928730a290d19660eed96304a9d24b453d670309 -SIZE (geant4/G4NDL.4.7.tar.gz) = 1114928821 +SHA256 (geant4/G4NDL.4.7.1.tar.gz) = d3acae48622118d2579de24a54d533fb2416bf0da9dd288f1724df1485a46c7c +SIZE (geant4/G4NDL.4.7.1.tar.gz) = 1113113881 SHA256 (geant4/G4PARTICLEXS.4.0.tar.gz) = 9381039703c3f2b0fd36ab4999362a2c8b4ff9080c322f90b4e319281133ca95 SIZE (geant4/G4PARTICLEXS.4.0.tar.gz) = 12242648 SHA256 (geant4/G4PhotonEvaporation.5.7.tar.gz) = 761e42e56ffdde3d9839f9f9d8102607c6b4c0329151ee518206f4ee9e77e7e5 diff --git a/science/geant4/pkg-plist b/science/geant4/pkg-plist index 226a3f5d30fe..c687c813ebbd 100644 --- a/science/geant4/pkg-plist +++ b/science/geant4/pkg-plist @@ -15481,6 +15481,7 @@ share/Geant4/data/G4ENSDFSTATE%%G4ENSDFSTATE_VERSION%%/README share/Geant4/data/G4INCL%%G4INCL_VERSION%%/README share/Geant4/data/G4INCL%%G4INCL_VERSION%%/table_radius_hfb.dat share/Geant4/data/G4NDL%%G4NDL_VERSION%%/README.old3 +share/Geant4/data/G4NDL%%G4NDL_VERSION%%/README.old4 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/0_0_Zero.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/1_1_Hydrogen.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/1_2_Hydrogen.z @@ -15512,9 +15513,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/CrossSection/18_41_Argon.z @@ -16109,9 +16108,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Capture/FSMF6/18_41_Argon.z @@ -16632,9 +16629,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/CrossSection/18_41_Argon.z @@ -17194,9 +17189,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Elastic/FS/18_41_Argon.z @@ -18055,9 +18048,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/CrossSection/18_41_Argon.z @@ -18613,9 +18604,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F01/18_41_Argon.z @@ -19161,9 +19150,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F02/19_39_Potassium.z @@ -19514,7 +19501,6 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F03/19_39_Potassium.z @@ -19833,9 +19819,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F04/18_41_Argon.z @@ -20369,9 +20353,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F05/18_41_Argon.z @@ -20891,9 +20873,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F06/18_41_Argon.z @@ -21355,9 +21335,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F08/19_39_Potassium.z @@ -22002,9 +21980,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/18_40_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F10/18_41_Argon.z @@ -22469,9 +22445,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F11/19_39_Potassium.z @@ -22774,9 +22748,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/17_36_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/17_37_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F13/19_39_Potassium.z @@ -23156,9 +23128,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F14/19_39_Potassium.z @@ -23501,9 +23471,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F15/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F15/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F15/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F15/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F15/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F15/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F15/18_38_Argon.z 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share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F28/19_39_Potassium.z @@ -27866,7 +27816,6 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/10_20_Neon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/10_21_Neon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/11_22_Sodium.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/13_26_Aluminum.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/18_37_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/19_40_Potassium.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F29/20_40_Calcium.z @@ -27902,9 +27851,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F30/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F30/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F30/17_35_Chlorine.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F30/17_36_Chlorine.z 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share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F31/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F31/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F31/19_39_Potassium.z @@ -28555,9 +28500,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F34/19_39_Potassium.z @@ -28819,9 +28762,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F35/19_39_Potassium.z @@ -29078,9 +29019,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/16_34_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/16_35_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/16_36_Sulfur.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/17_36_Chlorine.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/18_36_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/18_37_Argon.z -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/18_38_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/18_39_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/18_41_Argon.z share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/F36/19_39_Potassium.z @@ -29376,9 +29315,7 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z17.a39 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z17.a40 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a34 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a35 -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a36 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a37 -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a38 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a39 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a40 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/Inelastic/Gammas/z18.a41 @@ -30961,8 +30898,6 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/16_34_Su share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/16_36_Sulfur share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/17_35_Chlorine share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/17_37_Chlorine -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/18_36_Argon -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/18_38_Argon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/18_40_Argon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/19_39_Potassium share/Geant4/data/G4NDL%%G4NDL_VERSION%%/IsotopeProduction/CrossSection/19_40_Potassium @@ -31254,8 +31189,6 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/1 share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/14_30_Silicon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/17_35_Chlorine share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/17_37_Chlorine -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/18_36_Argon -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/18_38_Argon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/18_40_Argon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/19_39_Potassium share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Elastic/CrossSection/19_41_Potassium @@ -31344,8 +31277,6 @@ share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/14_30_Silicon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/17_35_Chlorine share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/17_37_Chlorine -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/18_36_Argon -share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/18_38_Argon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/18_40_Argon share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/19_39_Potassium share/Geant4/data/G4NDL%%G4NDL_VERSION%%/JENDL_HE/neutron/Inelastic/CrossSection/19_41_Potassium @@ -61554,7 +61485,6 @@ share/Geant4/examples/extended/medical/dna/moleculardna/src/PrimaryGeneratorSour share/Geant4/examples/extended/medical/dna/splitting/splitting.out share/Geant4/examples/extended/medical/dna/spower/alpha.in share/Geant4/examples/extended/medical/radiobiology/.README.txt -share/Geant4/examples/extended/medical/radiobiology/.clang-tidy share/Geant4/examples/extended/medical/radiobiology/CMakeLists.txt share/Geant4/examples/extended/medical/radiobiology/Doxyfile share/Geant4/examples/extended/medical/radiobiology/History diff --git a/science/mmg/Makefile b/science/mmg/Makefile index 66c4c5d53670..20acba012afe 100644 --- a/science/mmg/Makefile +++ b/science/mmg/Makefile @@ -1,6 +1,6 @@ PORTNAME= mmg -PORTVERSION= 5.7.3 DISTVERSIONPREFIX= v +DISTVERSION= 5.7.3 CATEGORIES= science MAINTAINER= ports@FreeBSD.org @@ -10,21 +10,19 @@ WWW= https://www.mmgtools.org/ LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= git:devel/git \ - bash:shells/bash LIB_DEPENDS= libscotch.so:cad/scotch \ - libElas.so:science/linearelasticity \ + libElas.so:science/linearelasticity \ libvtksys-${VTK_VER}.so:math/vtk${VTK_VER:R} -USES= cmake:testing perl5 shebangfix +USES= cmake perl5 shebangfix USE_PERL5= build -SHEBANG_FILES= scripts/*.sh +SHEBANG_FILES= scripts/*.pl +USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= MmgTools CMAKE_ON= BUILD_SHARED_LIBS -USE_LDCONFIG= yes .include <../../math/vtk9/Makefile.version> .include <bsd.port.mk> diff --git a/science/mmg/files/patch-CMakeLists.txt b/science/mmg/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..c7cb99ce1840 --- /dev/null +++ b/science/mmg/files/patch-CMakeLists.txt @@ -0,0 +1,14 @@ +--- CMakeLists.txt.orig 2024-04-25 08:15:24 UTC ++++ CMakeLists.txt +@@ -124,10 +124,7 @@ IF (NOT WIN32 OR MINGW) + IF (NOT WIN32 OR MINGW) + + ADD_CUSTOM_TARGET(GenerateGitHashMmg +- COMMAND ./git_log_mmg.sh ${PROJECT_SOURCE_DIR} ${MMGCOMMON_BINARY_DIR} +- WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/scripts/ +- COMMENT "Getting git commit hash" +- BYPRODUCTS ${MMGCOMMON_BINARY_DIR}/git_log_mmg.h ++ COMMAND cp ${PROJECT_SOURCE_DIR}/git_log_mmg.h ${MMGCOMMON_BINARY_DIR}/git_log_mmg.h + ) + ENDIF () + diff --git a/science/mmg/files/patch-git__log__mmg.h b/science/mmg/files/patch-git__log__mmg.h new file mode 100644 index 000000000000..4a8ec0ac0b8a --- /dev/null +++ b/science/mmg/files/patch-git__log__mmg.h @@ -0,0 +1,9 @@ +--- git_log_mmg.h.orig 2024-06-23 16:47:08 UTC ++++ git_log_mmg.h +@@ -0,0 +1,6 @@ ++#ifndef _GIT_LOG_MMG_H ++#define _GIT_LOG_MMG_H ++#define MMG_GIT_BRANCH "No git branch found" ++#define MMG_GIT_COMMIT "No git commit found" ++#define MMG_GIT_DATE "No git commit found" ++#endif diff --git a/science/molgif/Makefile b/science/molgif/Makefile index ff6b0d61be44..e4eab0e4e8a1 100644 --- a/science/molgif/Makefile +++ b/science/molgif/Makefile @@ -1,6 +1,6 @@ PORTNAME= molgif DISTVERSION= g20180108 -PORTREVISION= 21 +PORTREVISION= 22 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/py-hoomd-blue/Makefile b/science/py-hoomd-blue/Makefile index a824ccd29fa8..f81dec41152c 100644 --- a/science/py-hoomd-blue/Makefile +++ b/science/py-hoomd-blue/Makefile @@ -60,7 +60,7 @@ TBB_LIB_DEPENDS= libtbb.so:devel/onetbb .include <bsd.port.pre.mk> post-patch: -.if ${COMPILER_TYPE} == clang && ${COMPILER_VERSION} >= 160 +.if ${COMPILER_TYPE} == clang @${REINPLACE_CMD} -e 's|std::unary_function|std::__unary_function|' \ ${WRKSRC}/hoomd/ParticleData.cc .endif diff --git a/science/py-libpysal/Makefile b/science/py-libpysal/Makefile index ce96c43d6e49..43b12ba58113 100644 --- a/science/py-libpysal/Makefile +++ b/science/py-libpysal/Makefile @@ -1,17 +1,20 @@ PORTNAME= libpysal PORTVERSION= 4.7.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= sunpoet@FreeBSD.org COMMENT= Core components of PySAL A library of spatial analysis functions -WWW= https://pysal.org/libpysal/ +WWW= https://pysal.org/libpysal/ \ + https://github.com/pysal/libpysal LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}beautifulsoup>=0:www/py-beautifulsoup@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Jinja2>=0:devel/py-Jinja2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpy>=1.3,1:math/py-numpy@${PY_FLAVOR} \ @@ -22,7 +25,7 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}beautifulsoup>=0:www/py-beautifulsoup@${PY_F ${PYTHON_PKGNAMEPREFIX}scipy>=0.11:science/py-scipy@${PY_FLAVOR} USES= python -USE_PYTHON= autoplist concurrent distutils +USE_PYTHON= autoplist concurrent pep517 NO_ARCH= yes diff --git a/science/py-libpysal/pkg-descr b/science/py-libpysal/pkg-descr index 29c40683845c..6f07a9dcfd75 100644 --- a/science/py-libpysal/pkg-descr +++ b/science/py-libpysal/pkg-descr @@ -6,5 +6,3 @@ packages in the PySAL family: - Input-and output: libpysal.io - Computational geometry: libpysal.cg - Built-in example datasets libpysal.examples - -See also: https://github.com/pysal/libpysal diff --git a/science/tfel/Makefile b/science/tfel/Makefile index 1e6fccf49434..1fd3b2e547b0 100644 --- a/science/tfel/Makefile +++ b/science/tfel/Makefile @@ -44,7 +44,7 @@ TEST_TARGET= check .include <bsd.port.pre.mk> post-patch: -.if ${COMPILER_TYPE} == clang && ${COMPILER_VERSION} >= 160 +.if ${COMPILER_TYPE} == clang @${REINPLACE_CMD} -e 's|std::unary_function|std::__unary_function|' \ ${WRKSRC}/include/NUMODIS/Math/Utilities.hxx \ ${WRKSRC}/include/TFEL/Math/General/Abs.hxx |