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* biology/vsearch: Update to 2.30.4Jason W. Bacon5 days2-4/+4
* biology/gkl: pin to jdk 8 and 11Ronald Klop5 days1-0/+1
* biology/mothur: update 1.48.2 → 1.48.5Yuri Victorovich6 days2-5/+6
* biology/iolib: Update 1.14.10 => 1.15.1, take maintainershipÄlven6 days13-73/+58
* various: Bump Go ports for 1.24.12Adam Weinberger10 days5-5/+5
* Mk/Uses/python.mk: Remove USE_PYTHON=cython3{,_run,_test}Po-Chuan Hsieh11 days4-4/+4
* biology/py-macs2: Change USE_PYTHON from cython to cython0Po-Chuan Hsieh11 days1-1/+1
* biology/vsearch: Update to 2.30.3Jason W. Bacon13 days3-36/+4
* biology/sra-tools: Unbreak with extra JDK presentJason W. Bacon2026-01-111-1/+3
* biology/sra-tools: pin to java 17Ronald Klop2026-01-111-1/+2
* biology/hyphy: fix build on amd64 / i386Piotr Kubaj2026-01-051-0/+20
* biology/cytoscape: pin to openjdk8Ronald Klop2025-12-291-0/+1
* */*: bump PORTREVISION following devel/sse2neon updateRobert Clausecker2025-12-281-1/+1
* biology/vsearch: Add patch for FreeBSD 16Jason W. Bacon2025-12-201-0/+32
* biology/vsearch: Update to 2.30.2Jason W. Bacon2025-12-182-4/+4
* *: WITH_DEBUG is a user feature not a port oneMathieu Arnold2025-12-181-1/+0
* biology/biostar-tools: Update to 2.1Jason W. Bacon2025-12-182-4/+2
* biology/R-cran-BiocManager: Update to 1.30.27Jason W. Bacon2025-12-182-4/+4
* biology/vcflib: update BUILD_DEPENDS to keep building with zig 0.14Rodrigo Osorio2025-12-181-1/+1
* biology/sra-tools: Update to 3.3.0Jason W. Bacon2025-12-174-6/+21
* lang/rust: Bump revisions after 1.92.0Mikael Urankar2025-12-161-1/+1
* many: Unpin Go portsDag-Erling Smørgrav2025-12-151-1/+1
* biology/iqtree: Update to 3.0.1Joseph Mingrone2025-12-152-10/+9
* biology/hyphy: Update to 2.5.90Joseph Mingrone2025-12-152-4/+4
* biology/hyphy: Update to 2.5.89Joseph Mingrone2025-12-152-4/+4
* biology/psi88: Fix building with FlangGleb Popov2025-12-101-2/+7
* biology/snpeff: Mark BROKEN and set expiration date to 2026-01-31Daniel Engberg2025-12-071-0/+3
* biology/hyphy: Update to 2.5.88Joseph Mingrone2025-12-073-28/+13
* various: Bump Go ports for 1.24.11Adam Weinberger2025-12-035-4/+5
* biology/diamond: Update to 2.1.16 and add test targetJoseph Mingrone2025-11-292-4/+6
* biology/seqkit: update 2.10.1 → 2.11.0Yuri Victorovich2025-11-252-9/+9
* biology/seqkit: update 2.10.0 → 2.10.1Yuri Victorovich2025-11-122-9/+8
* lang/rust: Bump revisions after 1.91.1Mikael Urankar2025-11-111-1/+1
* various: Bump Go ports for 1.24.10Adam Weinberger2025-11-065-5/+5
* biology/diamond: Update to 2.1.15Joseph Mingrone2025-11-052-4/+4
* biology/molden: Take maintainershipYuri Victorovich2025-11-051-1/+1
* biology/spoa: update 4.1.0 → 4.1.5Yuri Victorovich2025-11-053-5/+24
* biology/ncbi-cxx-toolkit: update 29.6.0 → 29.7.0Yuri Victorovich2025-11-042-5/+4
* biology/py-cutadapt: update to 5.2Philippe Audeoud2025-10-292-4/+4
* biology/py-dnaio: Update to 1.2.4Wen Heping2025-10-223-4/+22
* biology/haplohseq: fix build with Boost-1.89 (+)Dima Panov2025-10-221-0/+3
* biology/cufflinks: fix build with Boost-1.89 (+)Dima Panov2025-10-221-0/+2
* devel/boost: bump consumers after boost upgrade (+)Dima Panov2025-10-209-11/+13
* various: Bump go ports for go-1.24.9Adam Weinberger2025-10-145-5/+5
* biology/ncbi-cxx-toolkit: Remove archivers/bzip2 dependencyYuri Victorovich2025-10-141-2/+2
* biology/ncbi-cxx-toolkit: update 29.0.1 → 29.6.0Yuri Victorovich2025-10-132-7/+4
* biology/seqwish: Unbundle sdsl-lite and fix some clang19 compilation errorsYuri Victorovich2025-10-114-11/+125
* devel/sdsl-lite: update 2.1.1-137 → 2.3.1.v.20Yuri Victorovich2025-10-101-0/+1
* biology/viennarna: Unbundle dlib, use port dependency insteadYuri Victorovich2025-10-093-5/+72
* many: Bump dependent ports after go124 updateAdam Weinberger2025-10-085-5/+5
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