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* python.mk: retire ${PYNUMPY}Charlie Li3 days20-26/+26
* math/py-numpy1: bump more RUN_DEPENDS consumersCharlie Li3 days2-1/+2
* math/py-numpy: switch all consumers to math/py-numpy1Charlie Li3 days14-13/+14
* */*: bump portrevision after java_default=25 updateRonald Klop4 days16-15/+16
* biology/py-gffutils: update 0.13 → 0.14Yuri Victorovich5 days3-8/+32
* biology/ugene: adoptMax Brazhnikov6 days1-1/+1
* biology/samtools: Update to 1.23.1Jason W. Bacon9 days2-4/+6
* biology/bcftools: Update to 1.23.1Jason W. Bacon9 days3-7/+13
* biology/htslib: Update to 1.23.1Jason W. Bacon9 days2-6/+8
* biology/vsearch: Update to 2.30.6Jason W. Bacon10 days2-4/+4
* biology/sra-tools: Unbreak distfileJason W. Bacon12 days1-3/+3
* biology/sra-tools: Update to 3.4.1Jason W. Bacon12 days4-78/+6
* biology/iolib: fix build on armv7Robert Clausecker13 days3-0/+33
* biology/seqkit: Broken on i386Yuri Victorovich13 days1-0/+2
* biology/wfa2-lib: Update to 2.3.6Jason W. Bacon2026-03-233-4/+6
* lang/rust: Bump revisions after 1.94.0Mikael Urankar2026-03-231-1/+1
* biology/fastp: Update to 1.2.0Jason W. Bacon2026-03-223-35/+55
* biology/iqtree: Update to 3.1.0Joseph Mingrone2026-03-222-8/+8
* biology/diamond: Update to 2.1.24Joseph Mingrone2026-03-222-4/+4
* *: Fix WWW with broken anchors-as-commentsTobias Kortkamp2026-03-171-1/+1
* biology/ugene: return to poolRobert Clausecker2026-03-151-1/+1
* biology/btllib: update 1.7.5 → 1.7.6Yuri Victorovich2026-03-143-17/+12
* biology/vsearch: Update to 2.30.5Jason W. Bacon2026-03-112-4/+4
* biology/salmon: Unbreak: Relax libgff version requirementJason W. Bacon2026-03-101-4/+4
* biology/libgff: Update to 2.0.1Jason W. Bacon2026-03-072-4/+4
* various: Bump ports for Go 1.25.8Adam Weinberger2026-03-065-5/+5
* biology/py-macs3: Update to 3.0.4Jason W. Bacon2026-03-054-10/+20
* biology/atac-seq: Update to 0.3.0Jason W. Bacon2026-03-052-4/+7
* biology/bowtie2: Update to 2.5.5Jason W. Bacon2026-03-053-5/+18
* biology/rna-seq: Update to 0.2.0Jason W. Bacon2026-03-042-3/+6
* biology/kallisto: Update to 0.52.0,1Jason W. Bacon2026-03-047-30/+85
* biology/gkl: mark broken on aarch64Ronald Klop2026-03-011-0/+2
* biology/hyphy: Update to 2.5.96Joseph Mingrone2026-02-283-4/+5
* biology/p5-TrimGalore: update 0.6.10 -> 0.6.11Rodrigo Osorio2026-02-283-8/+12
* */*: bump portrevision after java_default=21 updateRonald Klop2026-02-2616-4/+16
* biology/ncbi-blast+: only for aarch64, amd64Robert Clausecker2026-02-241-2/+3
* biology/ncbi-cxx-toolkit: only for aarch64, amd64Robert Clausecker2026-02-241-1/+3
* biology/infernal: not for ppc64leRobert Clausecker2026-02-241-1/+1
* biology/paml: Update to 4.10.10Joseph Mingrone2026-02-193-4/+11
* biology/hyphy: Update to 2.5.94Joseph Mingrone2026-02-193-4/+5
* biology/diamond: Update to 2.1.23Joseph Mingrone2026-02-192-5/+5
* */*: bump PORTREVISION after the upgrade of MPICHThierry Thomas2026-02-161-0/+1
* biology/andi: update 0.14-3 → 1.15Yuri Victorovich2026-02-162-6/+6
* misc: fix build with python 3.12Antoine Brodin2026-02-151-0/+1
* biology/iqtree: fix build on arm64Robert Clausecker2026-02-142-4/+13
* various: Bump ports for Go default 1.24->1.25Adam Weinberger2026-02-115-5/+5
* biology/py-htseq: Update 2.0.9 => 2.1.2Älven2026-02-062-12/+10
* some Maven build ports: pass JAVA_HOME to mavenRonald Klop2026-02-051-0/+3
* various: Bump Go ports for 1.24.13Adam Weinberger2026-02-055-5/+5
* biology/py-newick: Update to 1.11.0Wen Heping2026-02-042-4/+4
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