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* biology/bamutil: Update to 1.0.15Jason W. Bacon11 hours2-6/+6
* biology/fastp: Update to 0.23.1Jason W. Bacon14 hours4-21/+56
* *: fix tab vs. space issues, and comments according to the guide.Jimmy Olgeni5 days2-2/+2
* biology/treekin: UnbreakYuri Victorovich6 days1-0/+22
* biology/biostar-tools: Add py-deeptools to metaport depsJason W. Bacon7 days2-3/+4
* biology/py-deeptools: User-friendly tools for exploring deep-sequencing dataJason W. Bacon7 days4-0/+39
* biology/ugene: update UniPro UGENE to version 40.1 (bugfix release).Alexey Dokuchaev7 days2-4/+4
* biology/py-crossmap: chase ad5a0604c41cJan Beich7 days1-1/+1
* biology/py-bigwig: Rename to biology/py-pybigwigJason W. Bacon7 days4-1/+1
* biology/py-pybigwig: remove, duplicate of biology/py-bigwigAntoine Brodin7 days5-42/+0
* biology/py-deeptoolsintervals: Python interface for deepTools interval treesJason W. Bacon8 days4-0/+34
* biology/py-py-pybigwig: Patch out setup.py warningJason W. Bacon8 days1-0/+11
* biology/py-pybigwig: Fix poudriere buildJason W. Bacon8 days2-1/+3
* biology/py-pybigwig: Python access to bigWig files using libBigWigJason W. Bacon8 days4-0/+30
* biology/py-py2bit: Python interface for 2bit packed nucleotide filesJason W. Bacon8 days4-0/+25
* biology/biostar-tools: Add biology/bamutil to metaport depsJason W. Bacon9 days2-3/+4
* biology/bamutil: Utilities for working with SAM/BAM filesJason W. Bacon9 days7-0/+79
* biology/diamond: Update to 2.0.12Joseph Mingrone9 days2-5/+4
* *: Clean up some thingsTobias Kortkamp9 days1-1/+1
* biology/py-biopython: Update to 1.79Wen Heping9 days2-4/+4
* biology/diamond: enable on powerpc64lePiotr Kubaj12 days1-1/+1
* biology/diamond: enable on powerpc64Piotr Kubaj12 days1-1/+1
* biology/libneurosim: New port: Common interfaces for neuronal simulatorsYuri Victorovich13 days5-0/+64
* biology/hyphy: Enable on aarch64.Mikael Urankar13 days1-1/+1
* biology/diamond: Enable on aarch64.Mikael Urankar13 days1-1/+1
* biology/pooler: fix build on powerpcPiotr Kubaj2021-10-061-1/+6
* */*: Remove compiler:openmp from Mk/Uses/compiler.mkFernando ApesteguĂ­a2021-10-032-5/+4
* biology/ncbi-cxx-toolkit: Update 25.0.0 -> 25.2.0Yuri Victorovich2021-10-012-8/+6
* cleanup: drop support for EOL FreeBSD 11.XRene Ladan2021-09-305-10/+1
* biology/biostar-tools: Add biology/kallisto run depend to metaportJason W. Bacon2021-09-272-5/+6
* biology/unikmer: Update 0.18.4 -> 0.18.8Yuri Victorovich2021-09-262-7/+7
* biology/vcftools: Add CPE informationBernhard Froehlich2021-09-251-1/+3
* biology/ucsc-userapps: Add "kent" command in ${PREFIX}/binJason W. Bacon2021-09-243-0/+63
* biology/emboss: Add "emboss" command in ${LOCALBASE}/binJason W. Bacon2021-09-244-2/+66
* biology/bioparser: Update 3.0.12-2 -> 3.0.15Yuri Victorovich2021-09-212-5/+4
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-09-211-2/+2
* biology/py-PySCeS: Update 0.9.8a -> 1.0.0Yuri Victorovich2021-09-202-9/+8
* biology/py-libsedml: New port: SED-ML library for PythonYuri Victorovich2021-09-197-0/+89
* biology/libsedml: New port: C++ SED-ML libraryYuri Victorovich2021-09-195-0/+149
* biology/py-libnuml: Fix typoYuri Victorovich2021-09-191-1/+1
* biology/py-libnuml: New port: Numerical Markup Language for PythonYuri Victorovich2021-09-196-0/+68
* biology/libnuml: New port: C++ library for Numerical Markup LanguageYuri Victorovich2021-09-195-0/+80
* biology/seqkit: Update 0.16.1 -> 2.0.1Yuri Victorovich2021-09-182-7/+7
* biology/jellyfish: Switch to static tarball and update license infoJoseph Mingrone2021-09-172-10/+11
* biology/biolibc: Update to 0.2.0.11Jason W. Bacon2021-09-172-5/+5
* biology/ugene: update Unipro UGENE to version 40.0.Alexey Dokuchaev2021-09-164-19/+15
* biology/py-PySCeS: Update 0.9.8post1 -> 0.9.8aYuri Victorovich2021-09-143-5/+19
* biology/hhsuite: Fix build on aarch64Mikael Urankar2021-09-131-1/+3
* biology/mmseqs2: disable on 32-bitsPiotr Kubaj2021-09-121-1/+1
* biology/jellyfish: Fix unused open mode variableJason W. Bacon2021-09-112-0/+12