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* biology/seqan: update 1.3.1 -> 2.1.1Jason Unovitch2016-05-101-0/+1
* New port: biology/seqan-appsJason Unovitch2016-05-101-0/+1
* The BIOM file format (canonically pronounced biome) is designed to be aOlivier Duchateau2016-05-091-0/+1
* DNA query sequences against a protein reference database (BLASTP and BLASTXWen Heping2016-05-061-0/+1
* Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.Dmitry Marakasov2016-03-241-0/+1
* New port: biology/bowtie2.Raphael Kubo da Costa2016-03-231-0/+1
* New port: biology/slclust.Raphael Kubo da Costa2016-03-231-0/+1
* Trimmomatic performs a variety of useful trimming tasks for illuminaWen Heping2016-03-171-0/+1
* New port: biology/p5-transdecoderKurt Jaeger2016-03-161-0/+1
* New port: biology/bowtie.Raphael Kubo da Costa2016-03-051-0/+1
* New port: biology/vcftools.Raphael Kubo da Costa2016-02-261-0/+1
* The bedtools utilities are a suite of tools for performing a wide range ofWen Heping2016-01-191-0/+1
* Remove expired ports:Rene Ladan2015-11-281-3/+0
* BWA is a program for aligning sequencing reads against a large referenceRuslan Makhmatkhanov2015-09-251-0/+1
* Fast indexing and retrieval of FASTA records from flat file data bases.Ruslan Makhmatkhanov2015-09-251-0/+1
* Simple and quick FastQ and FastA tool for file reading and conversion.Ruslan Makhmatkhanov2015-09-251-0/+1
* FastTree infers approximately-maximum-likelihood phylogenetic trees fromRuslan Makhmatkhanov2015-09-251-0/+1
* The FASTX-Toolkit is a collection of command line tools for Short-ReadsRuslan Makhmatkhanov2015-09-251-0/+1
* Gordon's text utilities.Ruslan Makhmatkhanov2015-09-251-0/+1
* CD-HIT is a very widely used program for clustering and comparing protein orWen Heping2015-09-191-0/+1
* New port: biology/bcftoolsKurt Jaeger2015-06-051-0/+1
* Remove expired ports:Rene Ladan2015-01-011-1/+0
* Rename biology/ncbi-blast to biology/ncbi-blast+Michael Gmelin2014-12-301-1/+1
* Samtools implements various utilities for post-processing alignments in thePawel Pekala2014-12-151-0/+1
* HTSlib is an implementation of a unified C library for accessing common filePawel Pekala2014-12-141-0/+1
* Add new port biology/ncbi-blastJohn Marino2014-10-061-0/+1
* Second run at cleaning out non staged ports without pending PRBaptiste Daroussin2014-09-021-1/+0
* Remove non staged ports without pending PR from b*Baptiste Daroussin2014-09-011-3/+0
* Remove expired ports:Rene Ladan2014-04-181-2/+0
* Remove expired ports:Rene Ladan2014-04-131-2/+0
* biology/seqtools: Tools for visualising sequence alignmentsWilliam Grzybowski2013-11-101-1/+1
* - Disconnect ports removed in r325546Bryan Drewery2013-08-291-1/+0
* KDE3 and QT3 expired on 2013-07-01, remove these ports.Rene Ladan2013-07-261-1/+0
* Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.Alexey Dokuchaev2013-02-231-0/+1
* 2012-11-26 benchmarks/gsbench: No more public distfilesBaptiste Daroussin2012-11-281-1/+0
* 2012-10-20 chinese/wangttf: No more public distfilesBaptiste Daroussin2012-10-251-1/+0
* Add new ports biology/plink [1] and biology/plinkseq [2]:Max Brazhnikov2012-09-271-0/+2
* SeqAn is an open source C++ library of efficient algorithmsDmitry Marakasov2012-06-061-0/+1
* Bye bye abandonwares (part 2)Baptiste Daroussin2011-08-011-5/+0
* Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.Wen Heping2011-04-221-0/+1
* p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XMLWen Heping2010-03-011-0/+1
* python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)Wen Heping2009-12-291-0/+1
* pyfasta is a python module for fast, memory-efficient, pythonicWen Heping2009-11-181-0/+1
* Velvet is a de novo genomic assembler specially designed for short readDmitry Marakasov2009-11-071-0/+1
* Bio::SCF module allows you to read and update (in a restrictedMartin Wilke2009-08-281-0/+1
* Io_lib is a library of file reading and writing code to provide aMartin Wilke2009-08-281-0/+1
* Bio::NEXUS package provides an object-oriented, Perl-basedMartin Wilke2009-08-221-0/+1
* PhyML is a software that estimates maximum likelihood phylogenies fromDmitry Marakasov2009-07-211-0/+1
* p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. ThisMartin Wilke2009-07-011-0/+1
* PyCogent is a software library for genomic biology. It is a fully integratedMartin Wilke2009-06-221-0/+1
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