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* biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon2018-03-281-0/+1
* [new port] biology/canu: Single molecule sequence assemblerJason W. Bacon2017-12-221-0/+1
* [new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon2017-12-091-0/+1
* [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)...Jason W. Bacon2017-12-021-0/+1
* [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ...Jason W. Bacon2017-12-021-0/+1
* [new port] biology/fastqc: Quality control tool for high throughput sequence ...Jason W. Bacon2017-11-301-0/+1
* [new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon2017-11-291-0/+1
* New port, biology/iqtree: Efficient phylogenomic softwareJoseph Mingrone2017-10-211-0/+1
* Add p5-Bio-FeatureIO 1.6.905Sunpoet Po-Chuan Hsieh2017-09-151-0/+1
* Remove expired ports:Rene Ladan2017-08-231-1/+0
* bx-python is a python library and associated set of scripts to allow for rapidMartin Wilke2017-05-061-0/+1
* pysam is a lightweight wrapper of the htslib C-API and provides facilities toMartin Wilke2017-05-061-0/+1
* 2017-04-30 devel/stormlib-ghost++: Unfetchable for more than six months (goog...Larry Rosenman2017-04-301-1/+0
* Move devel/rubygem-bio to biology/rubygem-bioSunpoet Po-Chuan Hsieh2017-02-051-0/+1
* - Add p5-Bio-Coordinate 1.007001Sunpoet Po-Chuan Hsieh2016-12-191-0/+1
* - Move biology/p5-bioperl-run to biology/p5-BioPerl-RunSunpoet Po-Chuan Hsieh2016-12-181-1/+1
* - Move biology/p5-bioperl to biology/p5-BioPerlSunpoet Po-Chuan Hsieh2016-12-181-1/+1
* biology/njplot: Revive and update to version 2.4Joseph Mingrone2016-11-161-0/+1
* Remove expired ports without open PRs:Rene Ladan2016-07-041-1/+0
* biology/seqan: update 1.3.1 -> 2.1.1Jason Unovitch2016-05-101-0/+1
* New port: biology/seqan-appsJason Unovitch2016-05-101-0/+1
* The BIOM file format (canonically pronounced biome) is designed to be aOlivier Duchateau2016-05-091-0/+1
* DNA query sequences against a protein reference database (BLASTP and BLASTXWen Heping2016-05-061-0/+1
* Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.Dmitry Marakasov2016-03-241-0/+1
* New port: biology/bowtie2.Raphael Kubo da Costa2016-03-231-0/+1
* New port: biology/slclust.Raphael Kubo da Costa2016-03-231-0/+1
* Trimmomatic performs a variety of useful trimming tasks for illuminaWen Heping2016-03-171-0/+1
* New port: biology/p5-transdecoderKurt Jaeger2016-03-161-0/+1
* New port: biology/bowtie.Raphael Kubo da Costa2016-03-051-0/+1
* New port: biology/vcftools.Raphael Kubo da Costa2016-02-261-0/+1
* The bedtools utilities are a suite of tools for performing a wide range ofWen Heping2016-01-191-0/+1
* Remove expired ports:Rene Ladan2015-11-281-3/+0
* BWA is a program for aligning sequencing reads against a large referenceRuslan Makhmatkhanov2015-09-251-0/+1
* Fast indexing and retrieval of FASTA records from flat file data bases.Ruslan Makhmatkhanov2015-09-251-0/+1
* Simple and quick FastQ and FastA tool for file reading and conversion.Ruslan Makhmatkhanov2015-09-251-0/+1
* FastTree infers approximately-maximum-likelihood phylogenetic trees fromRuslan Makhmatkhanov2015-09-251-0/+1
* The FASTX-Toolkit is a collection of command line tools for Short-ReadsRuslan Makhmatkhanov2015-09-251-0/+1
* Gordon's text utilities.Ruslan Makhmatkhanov2015-09-251-0/+1
* CD-HIT is a very widely used program for clustering and comparing protein orWen Heping2015-09-191-0/+1
* New port: biology/bcftoolsKurt Jaeger2015-06-051-0/+1
* Remove expired ports:Rene Ladan2015-01-011-1/+0
* Rename biology/ncbi-blast to biology/ncbi-blast+Michael Gmelin2014-12-301-1/+1
* Samtools implements various utilities for post-processing alignments in thePawel Pekala2014-12-151-0/+1
* HTSlib is an implementation of a unified C library for accessing common filePawel Pekala2014-12-141-0/+1
* Add new port biology/ncbi-blastJohn Marino2014-10-061-0/+1
* Second run at cleaning out non staged ports without pending PRBaptiste Daroussin2014-09-021-1/+0
* Remove non staged ports without pending PR from b*Baptiste Daroussin2014-09-011-3/+0
* Remove expired ports:Rene Ladan2014-04-181-2/+0
* Remove expired ports:Rene Ladan2014-04-131-2/+0
* biology/seqtools: Tools for visualising sequence alignmentsWilliam Grzybowski2013-11-101-1/+1
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