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biology
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Makefile
Commit message (
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)
Author
Age
Files
Lines
*
biology/fastq-trim: Lightening fast sequence read trimmer
Jason W. Bacon
2022-03-19
1
-0
/
+1
*
biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)
Jason W. Bacon
2022-02-03
1
-0
/
+2
*
biology/libgff: GFF/GTF parsing library based on GCLib
Jason W. Bacon
2021-12-05
1
-0
/
+1
*
biology/bio-mocha: bcftools plugin for mosaic chromosomal alterations
Jason W. Bacon
2021-12-03
1
-0
/
+1
*
biology/gffread: GFF/GTF format conversions, filtering, FASTA extraction, etc
Jason W. Bacon
2021-11-10
1
-0
/
+1
*
*/Makefile: Sort SUBDIRs
Po-Chuan Hsieh
2021-10-25
1
-1
/
+1
*
biology/py-deeptools: User-friendly tools for exploring deep-sequencing data
Jason W. Bacon
2021-10-14
1
-0
/
+1
*
biology/py-bigwig: Rename to biology/py-pybigwig
Jason W. Bacon
2021-10-13
1
-1
/
+1
*
biology/py-pybigwig: remove, duplicate of biology/py-bigwig
Antoine Brodin
2021-10-13
1
-1
/
+0
*
biology/py-pybigwig: Fix poudriere build
Jason W. Bacon
2021-10-13
1
-0
/
+1
*
biology/py-pybigwig: Python access to bigWig files using libBigWig
Jason W. Bacon
2021-10-13
1
-0
/
+1
*
biology/py-py2bit: Python interface for 2bit packed nucleotide files
Jason W. Bacon
2021-10-13
1
-0
/
+1
*
biology/bamutil: Utilities for working with SAM/BAM files
Jason W. Bacon
2021-10-12
1
-0
/
+1
*
biology/libneurosim: New port: Common interfaces for neuronal simulators
Yuri Victorovich
2021-10-08
1
-0
/
+1
*
*/Makefile: Sort SUBDIRs
Po-Chuan Hsieh
2021-09-21
1
-2
/
+2
*
biology/py-libsedml: New port: SED-ML library for Python
Yuri Victorovich
2021-09-19
1
-0
/
+1
*
biology/libsedml: New port: C++ SED-ML library
Yuri Victorovich
2021-09-19
1
-0
/
+1
*
biology/py-libnuml: New port: Numerical Markup Language for Python
Yuri Victorovich
2021-09-19
1
-0
/
+1
*
biology/libnuml: New port: C++ library for Numerical Markup Language
Yuri Victorovich
2021-09-19
1
-0
/
+1
*
biology/sam2pairwise: Show pairwise alignment for each read in a SAM file
Jason W. Bacon
2021-09-07
1
-0
/
+1
*
biology/py-pywgsim: Modified wgsim genomic data simulator
Jason W. Bacon
2021-09-06
1
-0
/
+1
*
biology/biolibc-tools: High-performance tools based on biolibc
Jason W. Bacon
2021-08-30
1
-0
/
+1
*
biology/bfc: Correct sequencing errors from Illumina sequencing data
Jason W. Bacon
2021-08-23
1
-0
/
+1
*
biology/flash: Fast Length Adjustment of SHort reads
Jason W. Bacon
2021-08-23
1
-0
/
+1
*
biology/py-PySCeS: New port: Python Simulator for Cellular Systems
Yuri Victorovich
2021-08-17
1
-0
/
+1
*
biology/py-python-libsbml: New port: LibSBML Python API
Yuri Victorovich
2021-08-17
1
-0
/
+1
*
biology/sigviewer: New port: Viewing application for biosignals
Yuri Victorovich
2021-08-17
1
-0
/
+1
*
biology/biosig: New port: Library for reading and writing different biosignal...
Yuri Victorovich
2021-08-17
1
-0
/
+1
*
biology/py-ont-fast5-api: Interface to Oxford Nanopore .fast5 files
Jason W. Bacon
2021-08-13
1
-0
/
+1
*
biology/erminej: Analyses of gene sets, e.g. gene expression profiling
Jason W. Bacon
2021-07-09
1
-0
/
+1
*
biology/py-goatools: Tools for processing and visualizing Gene Ontology terms
Jason W. Bacon
2021-07-02
1
-0
/
+1
*
biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suite
Jason W. Bacon
2021-06-24
1
-0
/
+1
*
biology/sra-tools: NCBI's toolkit for handling data in INSDC Sequence Read Ar...
Jason W. Bacon
2021-06-22
1
-0
/
+1
*
biology/biostar-tools: Meta-port for Biostar Handbook tools
Jason W. Bacon
2021-06-18
1
-0
/
+1
*
biology/peak-classifier: Classify peaks based on GFF features
Jason W. Bacon
2021-06-14
1
-0
/
+1
*
biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkit
Yuri Victorovich
2021-05-26
1
-0
/
+1
*
biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set opera...
Yuri Victorovich
2021-05-26
1
-0
/
+1
*
New port: biology/seqan3: C++ header-only library for biological sequence ana...
Yuri Victorovich
2021-05-12
1
-0
/
+1
*
Hook biology/ucsc-userapps to the build
Antoine Brodin
2021-04-25
1
-0
/
+1
*
biology/ncbi-entrez-direct: Access to the NCBI's interconnected databases
Jason W. Bacon
2021-04-24
1
-0
/
+1
*
New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...
Yuri Victorovich
2021-04-20
1
-0
/
+1
*
biology/snpeff: Genetic variant annotation and effect prediction toolbox
Jason W. Bacon
2021-04-18
1
-0
/
+1
*
biology/bbmap: BBMap short read aligner, and other bioinformatic tools
Jason W. Bacon
2021-04-18
1
-0
/
+1
*
biology/readseq: Read and reformat biosequences, Java command-line version
Jason W. Bacon
2021-04-18
1
-0
/
+1
*
New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi...
Yuri Victorovich
2021-04-16
1
-0
/
+1
*
biology/py-crossmap: Lift over genomics coordinates between assemblies
Jason W. Bacon
2021-04-12
1
-0
/
+1
*
biology/py-bigwig: Python access to bigWig files using libBigWig
Jason W. Bacon
2021-04-12
1
-0
/
+1
*
New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...
Yuri Victorovich
2021-04-12
1
-0
/
+1
*
Remove expired ports:
Rene Ladan
2021-04-07
1
-3
/
+0
*
One more small cleanup, forgotten yesterday.
Mathieu Arnold
2021-04-07
1
-1
/
+0
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