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* New port: biology/rampler: Standalone module for sampling genomic sequencesYuri Victorovich2021-01-191-0/+1
* New port: biology/edlib: Fast C++ library for sequence alignment using edit d...Yuri Victorovich2021-01-191-0/+1
* New port: biology/spoa: C++ implementation of the partial order alignment (PO...Yuri Victorovich2021-01-191-0/+1
* New port: biology/biosoup: Collection of C++ header-only data structures for ...Yuri Victorovich2021-01-191-0/+1
* New port: biology/bioparser: C++ header only parsing library for several form...Yuri Victorovich2021-01-191-0/+1
* Hook haplohseq to the buildAntoine Brodin2021-01-141-0/+1
* biology/pooler: Optimise DNA sequencing primer-set combinationsJason W. Bacon2020-11-151-0/+1
* biology/py-biom-format: Restore in preparation for an update to v2.1.8Joseph Mingrone2020-09-241-0/+1
* Remove expired ports:Rene Ladan2020-09-191-2/+0
* Remove expired ports:Rene Ladan2020-08-271-1/+0
* Remove deprecated ports:Rene Ladan2020-08-151-1/+0
* Add rubygem-bio-shell 1.0.0Sunpoet Po-Chuan Hsieh2020-07-241-0/+1
* Add rubygem-bio-old-biofetch-emulator 1.0.0Sunpoet Po-Chuan Hsieh2020-07-241-0/+1
* Add rubygem-bio-executables 1.0.0Sunpoet Po-Chuan Hsieh2020-07-241-0/+1
* biology/picard-tools: CLI tools for manipulating sequencing dataJason W. Bacon2020-06-131-0/+1
* biology/bioawk: BWK awk modified for biological dataJason W. Bacon2020-06-051-0/+1
* biology/subread: Read alignment, quantification and mutation discoveryJason W. Bacon2020-06-051-0/+1
* bioloty/vt: Discovers short variants from Next Generation Sequencing dataJason W. Bacon2020-06-041-0/+1
* New port: biology/py-hits: Utilities for processing high-throughput sequencin...Yuri Victorovich2020-05-161-0/+1
* New port: biology/py-scikit-bio: Data structures, algorithms, educational res...Yuri Victorovich2020-05-161-0/+1
* New port: biology/py-pandas-charm: Library for getting character matrices int...Yuri Victorovich2020-05-161-0/+1
* New port: biology/py-ete3: Framework for the analysis and visualization of treesYuri Victorovich2020-05-161-0/+1
* New port: biology/scrm: Coalescent simulator for biological sequencesYuri Victorovich2020-05-151-0/+1
* - Resurrect and unbreak by updating to version 34.0Alexey Dokuchaev2020-05-101-0/+1
* Remove expired ports:Rene Ladan2020-05-051-5/+0
* biology/plink: Whole genome association analysis toolsetJason W. Bacon2020-05-041-0/+1
* biology/gcta: Genome-wide Complex Trait AnalysisJason W. Bacon2020-04-151-0/+1
* Resurrect biology/linux-foldingathomeMateusz Piotrowski2020-03-211-0/+1
* Remove expired ports:Rene Ladan2020-01-271-2/+0
* Add p5-Bio-Variation 1.7.4Sunpoet Po-Chuan Hsieh2019-12-081-0/+1
* Add p5-Bio-DB-NCBIHelper 1.7.6Sunpoet Po-Chuan Hsieh2019-12-081-0/+1
* Add p5-Bio-DB-EMBL 1.7.4Sunpoet Po-Chuan Hsieh2019-12-081-0/+1
* Remove expired ports:Rene Ladan2019-10-161-2/+0
* biology/tophat: Fast splice junction mapper for RNA-Seq readsJason W. Bacon2019-09-271-0/+1
* biology/py-multiqc: Aggregate bioinformatics analysis reportsJason W. Bacon2019-09-231-0/+1
* biology/haplohseq: Identify regions of allelic imbalanceJason W. Bacon2019-09-161-0/+1
* New port: biology/libbigwig: C library for handling bigWig files (containing ...Yuri Victorovich2019-07-111-0/+1
* New port: biology/viennarna: Alignment tools for the structural analysis of RNAYuri Victorovich2019-06-241-0/+1
* New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich2019-06-151-0/+1
* biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon2019-05-261-0/+1
* New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich2019-05-251-0/+1
* New port: biology/mothur: Software for bioinformatics of the microbial ecolog...Yuri Victorovich2019-05-201-0/+1
* New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich2019-05-191-0/+1
* biology/gemma: Genome-wide Efficient Mixed Model AssociationJason W. Bacon2019-05-171-0/+1
* biology/vsearch: Versatile open-source tool for metagenomicsJason W. Bacon2019-05-091-0/+1
* biology/fastp: Ultra-fast all-in-one FASTQ preprocessorJason W. Bacon2019-05-031-0/+1
* biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequencesJason W. Bacon2019-04-241-0/+1
* biology/star: Spliced Transcripts Alignment to a ReferenceJason W. Bacon2019-04-211-0/+1
* New port: biology/py-xenaPython: API for Xena Hub to access genetic informati...Yuri Victorovich2019-04-121-0/+1
* biology/py-dnaio: Read and write FASTQ and FASTAJason W. Bacon2019-03-241-0/+1
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