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* biology/fastx-toolkit: Unbreak build on 14-CURRENTJason W. Bacon2023-03-073-1/+13
| | | | Remove developer warning flags, including -Werror causing build failure
* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* Update CONFLICTS definitions in categories a* to c*Stefan Eßer2022-02-061-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | Update the CONFLICTS definitions of ports in the following categories: - accessibility - archivers - audio - benchmarks - biology - cad - chinese - comms - converters An attempt has been made to use generic conflicts patterns that do not have to be updated whenever a new version of a conflicting port is added to the ports system. There is a misunderstanding that the port being built/installed has to be omitted from the conflicts pattern. This is not true - the port being built is implicitly non-conflicting due to logic in bsd.port.mk. Approved by: portmgr (implicit)
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/fastx-toolkit: Fix build on FreeBSD 12Jason W. Bacon2018-05-162-2/+19
| | | | | | | | Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D15451 Notes: svn path=/head/; revision=470124
* Multiple ports:Jason W. Bacon2018-01-311-2/+1
| | | | | | | | | | | Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org Remove Created by comments for same user Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14128 Notes: svn path=/head/; revision=460452
* Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.Mathieu Arnold2016-04-011-1/+1
| | | | | | | | With hat: portmgr Sponsored by: Absolight Notes: svn path=/head/; revision=412344
* - Clarify LICENSEDmitry Marakasov2016-03-241-4/+3
| | | | | | | | | | | - Add LICENSE_FILE - Remove USES=tar:bzip2 (incorrect and no-op with USE_GITHUB) - Drop unneeded (and incorrect anyway) PKG_CONFIG_PATH Approved by: portmgr blanket Notes: svn path=/head/; revision=411790
* Always set the DEFAULT github DISTFILE with .tar.gz for EXTRACT_SUFX.Mathieu Arnold2016-03-081-2/+2
| | | | | | | | | | | | | | | Fix distinfo for the offending ports. lang/yorick's tag was moved, and the added patch was no longer needed. PR: 207644 Submitted by: mat Exp-run by by: antoine Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D4268 Notes: svn path=/head/; revision=410613
* Cleanup GH_* and variables order.Mathieu Arnold2015-12-291-1/+0
| | | | | | | Sponsored by: Absolight Notes: svn path=/head/; revision=404743
* - Update maintainer mail addressMartin Wilke2015-12-111-2/+2
| | | | | | | | | | | | - Update/Remove MASTER_SITE PR: 204755 Submitted by: jwbacon@tds.net (maintainer) Approved by: mat (mentor) Differential Revision: D4493 Notes: svn path=/head/; revision=403506
* The FASTX-Toolkit is a collection of command line tools for Short-ReadsRuslan Makhmatkhanov2015-09-254-0/+56
FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net> Notes: svn path=/head/; revision=397847
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