ports - FreeBSD ports tree

	Commit message (Collapse)	Author	Age	Files	Lines
*	biology/mmseqs2: disable on 32-bits	Piotr Kubaj	2021-09-12	1	-1/+1
\| \| \| \|	32-bits are not supported per https://github.com/soedinglab/MMseqs2/issues/460
*	biology/mmseqs2: Fix runtime error when built with clang	Jason W. Bacon	2021-06-29	1	-6/+2
\| \| \| \| \|	Disable IPS4O to avoid deadlocks (upstream developer fix) Removing USE_GCC should fix pkg build errors caused by
*	biology/mmseqs2: Enable at least SSE2 by default	Jason W. Bacon	2021-06-26	6	-4/+90
\| \| \| \| \|	Hangs when built with clang and minimal optimizations, so build with GCC temporarily. Upstream is investigating.
*	biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suite	Jason W. Bacon	2021-06-24	4	-0/+93
	MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for FreeBSD, Linux, MacOS, and (via via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.