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* biology/p5-BioPerl: Update to 1.007008Po-Chuan Hsieh2023-10-113-11/+8
| | | | | | | - Update WWW - Sort *_DEPENDS Changes: https://metacpan.org/dist/BioPerl/changes
* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* biology: remove 'Created by' linesTobias C. Berner2022-07-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | A big Thank You to the original contributors of these ports: * Aaron Dalton <aaron@FreeBSD.org> * Akinori MUSHA aka knu <knu@idaemons.org> * Andrey Zakhvatov * Bob Zimmermann <rpz@cse.wustl.edu> * Camson Huynh <chuynh@biolateral.com.au> * Dan Siercks <dsiercks@uwm.edu> * Fernan Aguero <fernan@iib.unsam.edu.ar> * Hannes Hauswedell <h2+fbsdports@fsfe.org> * J. Bacon <jwb@FreeBSD.org> * Jason Bacon <jwb@FreeBSD.org> * Jeremy <karlj000@unbc.ca> * Johann Visagie <johann@egenetics.com> * Johann Visagie <wjv@FreeBSD.org> * Mauricio Herrera Cuadra <mauricio@arareko.net> * Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> * Motomichi Matsuzaki <mzaki@e-mail.ne.jp> * Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> * Motomichi Matsuzaki <mzaki@niid.go.jp> * Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Razi Khaja <razi@genet.sickkids.on.ca> * Reed A. Cartwright <cartwright@asu.edu> * Ryo MIYAMOTO * Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> * Sangwoo Shim <sangwoos@gmail.com> * Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Tassilo Philipp <tphilipp@potion-studios.com> * Tony Maher * Tony Maher <tonym@biolateral.com.au> * Wen Heping <wen@FreeBSD.org> * Wen Heping <wenheping@gmail.com> * Yonatan <onatan@gmail.com> * Yuri Victorovich <yuri@rawbw.com> * ballen * barnhart@genetics.wustl.edu * camson@bilateral.com.au * chuynh@biolateral.com.au * dbader@eece.unm.edu * frankch@waru.life.nthu.edu.tw * h2 * lentferj * maho@FreeBSD.org * mzaki@biol.s.u-tokyo.ac.jp * tonym * wen@FreeBSD.org With hat: portmgr
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* Move devel/p5-IO-stringy to devel/p5-IO-Stringy and update to 2.113Sunpoet Po-Chuan Hsieh2020-06-261-1/+2
| | | | | | | | | | | | - Fix LICENSE_FILE - Update pkg-descr - Update WWW - Bump PORTREVISION of dependent ports for dependency change Changes: https://metacpan.org/changes/distribution/IO-Stringy Notes: svn path=/head/; revision=540492
* Update to 1.007007 (1.7.7)Sunpoet Po-Chuan Hsieh2019-12-083-7/+5
| | | | | | | Changes: https://metacpan.org/changes/distribution/BioPerl Notes: svn path=/head/; revision=519356
* Update to 1.007006 (1.7.6)Sunpoet Po-Chuan Hsieh2019-09-073-19/+8
| | | | | | | | | - Remove PGTEST and SQLITETEST options: DBD::Pg and DBD::SQLite have been removed from BioPerl by upstream for the move of modules and programs into separate distributions Changes: https://metacpan.org/changes/distribution/BioPerl Notes: svn path=/head/; revision=511437
* Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh2019-08-113-20/+5
| | | | | | | | | | - Fix DISTNAME - Bump PORTREVISION for package change Changes: https://metacpan.org/changes/distribution/BioPerl Notes: svn path=/head/; revision=508637
* Update WWWSunpoet Po-Chuan Hsieh2019-08-111-1/+1
| | | | Notes: svn path=/head/; revision=508608
* Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh2019-02-223-17/+2
| | | | | | | Changes: https://metacpan.org/changes/distribution/BioPerl Notes: svn path=/head/; revision=493589
* Update to 1.007004 (1.7.4)Sunpoet Po-Chuan Hsieh2019-02-205-998/+189
| | | | | | | | | | | | - Add LICENSE_FILE - Use USES=shebangfix - Use COPYTREE_SHARE instead of CP -R - Take maintainership Changes: https://metacpan.org/changes/distribution/BioPerl Notes: svn path=/head/; revision=493447
* Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, exceptDag-Erling Smørgrav2018-10-061-2/+2
| | | | | | | | | | for where it resulted in a change in output from build-depends-list or run-depends-list. Approved by: portmgr (adamw) Notes: svn path=/head/; revision=481365
* Fix license information for portgs that use "the same license as Perl".Mathieu Arnold2017-09-151-1/+1
| | | | | | | Sponsored by: Absolight Notes: svn path=/head/; revision=449893
* - Update to 1.007002Wen Heping2017-09-133-15/+4
| | | | | | | Changes: http://search.cpan.org/src/CJFIELDS/BioPerl-1.007002/Changes Notes: svn path=/head/; revision=449746
* Remove outdated PERL_LEVEL checkSunpoet Po-Chuan Hsieh2017-06-011-8/+2
| | | | Notes: svn path=/head/; revision=442335
* - Fix shebangsMartin Wilke2017-04-221-2/+3
| | | | Notes: svn path=/head/; revision=439170
* Bump PORTREVISION for ports affected by the fix the last commit.Mathieu Arnold2017-01-311-0/+1
| | | | | | | | Done with: Tools/scripts/bump-revision.sh Sponsored by: Absolight Notes: svn path=/head/; revision=432932
* - Update to 1.007001Sunpoet Po-Chuan Hsieh2016-12-196-383/+180
| | | | | | | | | | | - Update *_DEPENDS - Use TEST_DEPENDS: Test::Most and URI::Escape are test-only dependencies - Use PORTDATA, PORTDOCS and PORTEXAMPLES Changes: http://search.cpan.org/dist/BioPerl/Changes Notes: svn path=/head/; revision=428940
* - Move biology/p5-bioperl to biology/p5-BioPerlSunpoet Po-Chuan Hsieh2016-12-186-0/+2223
- Sort *_DEPENDS - Bump PORTREVISION for dependent ports Notes: svn path=/head/; revision=428868
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