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* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* Deorbit RESTRICTED && NO_CDROM, part two.Mathieu Arnold2021-05-061-1/+6
| | | | | | | | | Move ports to the licenses framework. RESTRICTED → auto-accept (unless expressly stated otherwise) NO_CDROM → dist-mirror pkg-mirror auto-accept Differential Revision: https://reviews.freebsd.org/D30010
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 1).Alexey Dokuchaev2020-05-271-1/+1
| | | | Notes: svn path=/head/; revision=536688
* Add DOCS options to ports that should have one.Mathieu Arnold2018-09-101-0/+2
| | | | | | | | | | | Also various fixes related to said option. PR: 230864 Submitted by: mat exp-runs by: antoine Notes: svn path=/head/; revision=479406
* - Fix various distinfo errorsAlex Kozlov2014-10-161-1/+0
| | | | | | | | | | | | - Remove unused USE_* knobs - Fix typos in USE_* knobs - Remove empty lines after .include <bsd.port.mk> Approved by: portmgr (bapt) Differential Revision: https://reviews.freebsd.org/D911 Notes: svn path=/head/; revision=370983
* update ports:Kurt Jaeger2014-08-2321-40/+589
| | | | | | | | | | | | | | | biology/phrab biology/phred biology/consed Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to obtain the tarballs. PR: 191336 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer) Notes: svn path=/head/; revision=365765
* Replace maintainer's email address with one that seems to workAntoine Brodin2014-05-101-1/+1
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=353593
* Convert biology to MDOCS and MEXAMPLESAdam Weinberger2014-01-031-1/+1
| | | | Notes: svn path=/head/; revision=338550
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-5/+2
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* Teach the building cluster that these ports are not to be buildEdwin Groothuis2008-05-251-0/+3
| | | | Notes: svn path=/head/; revision=213667
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-244-0/+113
assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> Notes: svn path=/head/; revision=213596
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