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* Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=rubyMuhammad Moinur Rahman2023-01-141-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | Switch from Mk/bsd.ruby.mk to Mk/Uses/ruby.mk Notable changes are. - Mk/bsd.ruby.mk is moved to Mk/Uses/ruby.mk. - USE_RUBY=yes is replaced with USES=ruby. - USE_RUBY_EXTCONF is replaced with USES=ruby:extconf. - USE_RUBY_RDOC is replaced with USES=ruby:rdoc. - USE_RUBY_SETUP is replaces with USES=ruby:setup. - RUBY_NO_BUILD_DEPENDS and RUBY_NO_RUN_DEPENDS are replaced with USES=ruby:{build,none,run}. - RUBY_REQUIRE isn't used anywhere, so removed. - USES=gem now implies USES=ruby. This is mainly the work of yasu@ at https://reviews.freebsd.org/D27863 I have just made some cosmetic changes and ran exp-run to test that the tree is not in a BROKEN state. Approved by: portmgr Differential Revision: https://reviews.freebsd.org/D37925
* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* biology: remove 'Created by' linesTobias C. Berner2022-07-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | A big Thank You to the original contributors of these ports: * Aaron Dalton <aaron@FreeBSD.org> * Akinori MUSHA aka knu <knu@idaemons.org> * Andrey Zakhvatov * Bob Zimmermann <rpz@cse.wustl.edu> * Camson Huynh <chuynh@biolateral.com.au> * Dan Siercks <dsiercks@uwm.edu> * Fernan Aguero <fernan@iib.unsam.edu.ar> * Hannes Hauswedell <h2+fbsdports@fsfe.org> * J. Bacon <jwb@FreeBSD.org> * Jason Bacon <jwb@FreeBSD.org> * Jeremy <karlj000@unbc.ca> * Johann Visagie <johann@egenetics.com> * Johann Visagie <wjv@FreeBSD.org> * Mauricio Herrera Cuadra <mauricio@arareko.net> * Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> * Motomichi Matsuzaki <mzaki@e-mail.ne.jp> * Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> * Motomichi Matsuzaki <mzaki@niid.go.jp> * Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Razi Khaja <razi@genet.sickkids.on.ca> * Reed A. Cartwright <cartwright@asu.edu> * Ryo MIYAMOTO * Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> * Sangwoo Shim <sangwoos@gmail.com> * Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Tassilo Philipp <tphilipp@potion-studios.com> * Tony Maher * Tony Maher <tonym@biolateral.com.au> * Wen Heping <wen@FreeBSD.org> * Wen Heping <wenheping@gmail.com> * Yonatan <onatan@gmail.com> * Yuri Victorovich <yuri@rawbw.com> * ballen * barnhart@genetics.wustl.edu * camson@bilateral.com.au * chuynh@biolateral.com.au * dbader@eece.unm.edu * frankch@waru.life.nthu.edu.tw * h2 * lentferj * maho@FreeBSD.org * mzaki@biol.s.u-tokyo.ac.jp * tonym * wen@FreeBSD.org With hat: portmgr
* Fix CONFLICTS entries of multiple portsStefan Eßer2022-01-101-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | There have been lots of missing CONFLICTS_INSTALL entries, either because conflicting ports were added without updating existing ports, due to name changes of generated packages, due to mis-understanding the format and semantics of the conflicts entries, or just due to typoes in package names. This patch is the result of a comparison of all files contained in the official packages with each other. This comparison was based on packages built with default options and may therefore have missed further conflicts with optionally installed files. Where possible, version numbers in conflicts entries have been generalized, some times taking advantage of the fact that a port cannot conflict with itself (due to logic in bsd.port.mk that supresses the pattern match result in that case). A few ports that set the conflicts variables depending on complex conditions (e.g. port options), have been left unmodified, despite probably containing outdated package names. These changes should only affect the installation of locally built ports, not the package building with poudriere. They should give an early indication of the install conflict in cases where currently the pkg command aborts an installation when it detects that an existing file would be overwritten, Approved by: portmgr (implicit)
* biology/rubygem-bio-shell: Update to 1.0.1Po-Chuan Hsieh2021-11-212-4/+4
| | | | Changes: https://github.com/bioruby/bioruby-shell/commits/master
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* Add rubygem-bio-shell 1.0.0Sunpoet Po-Chuan Hsieh2020-07-243-0/+37
bio-shell, providing BioRuby Shell, is a command-line interface for BioRuby, an open source bioinformatics library for Ruby. This code has historically been part of the BioRuby gem, but has been split into its own gem as part of an effort to modularize BioRuby. bio-shell and many more plugins are available at biogems.info. WWW: https://github.com/bioruby/bioruby-shell Notes: svn path=/head/; revision=543012