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# $FreeBSD$
#
COMMENT = Biology
SUBDIR += abyss
SUBDIR += artemis
SUBDIR += avida
SUBDIR += babel
SUBDIR += bamtools
SUBDIR += bcftools
SUBDIR += bedtools
SUBDIR += biococoa
SUBDIR += bolt-lmm
SUBDIR += bowtie
SUBDIR += bowtie2
SUBDIR += bwa
SUBDIR += canu
SUBDIR += cd-hit
SUBDIR += cdbfasta
SUBDIR += checkm
SUBDIR += chemeq
SUBDIR += clustal-omega
SUBDIR += clustalw
SUBDIR += consed
SUBDIR += cufflinks
SUBDIR += cytoscape
SUBDIR += ddocent
SUBDIR += diamond
SUBDIR += dsr-pdb
SUBDIR += emboss
SUBDIR += exonerate
SUBDIR += fasta
SUBDIR += fasta3
SUBDIR += fastahack
SUBDIR += fastdnaml
SUBDIR += fastool
SUBDIR += fastp
SUBDIR += fastqc
SUBDIR += fasttree
SUBDIR += fastx-toolkit
SUBDIR += figtree
SUBDIR += fluctuate
SUBDIR += freebayes
SUBDIR += garlic
SUBDIR += gatk
SUBDIR += gemma
SUBDIR += gff2ps
SUBDIR += gmap
SUBDIR += gperiodic
SUBDIR += graphlan
SUBDIR += grappa
SUBDIR += groopm
SUBDIR += haplohseq
SUBDIR += hhsuite
SUBDIR += hisat2
SUBDIR += hmmer
SUBDIR += htslib
SUBDIR += hyphy
SUBDIR += igv
SUBDIR += infernal
SUBDIR += iolib
SUBDIR += iqtree
SUBDIR += jalview
SUBDIR += jellyfish
SUBDIR += kallisto
SUBDIR += lagan
SUBDIR += lamarc
SUBDIR += libbigwig
SUBDIR += libgtextutils
SUBDIR += libsbml
SUBDIR += linux-foldingathome
SUBDIR += mafft
SUBDIR += mapm3
SUBDIR += migrate
SUBDIR += minimap2
SUBDIR += molden
SUBDIR += mopac
SUBDIR += mothur
SUBDIR += mrbayes
SUBDIR += mummer
SUBDIR += muscle
SUBDIR += ncbi-blast+
SUBDIR += ncbi-cxx-toolkit
SUBDIR += ncbi-toolkit
SUBDIR += ngs-sdk
SUBDIR += p5-AcePerl
SUBDIR += p5-Bio-ASN1-EntrezGene
SUBDIR += p5-Bio-Cluster
SUBDIR += p5-Bio-Coordinate
SUBDIR += p5-Bio-Das
SUBDIR += p5-Bio-Das-Lite
SUBDIR += p5-Bio-FeatureIO
SUBDIR += p5-Bio-GFF3
SUBDIR += p5-Bio-Glite
SUBDIR += p5-Bio-Graphics
SUBDIR += p5-Bio-MAGETAB
SUBDIR += p5-Bio-NEXUS
SUBDIR += p5-Bio-Phylo
SUBDIR += p5-Bio-SCF
SUBDIR += p5-BioPerl
SUBDIR += p5-BioPerl-Run
SUBDIR += p5-TrimGalore
SUBDIR += p5-transdecoder
SUBDIR += paml
SUBDIR += pbbam
SUBDIR += pbcopper
SUBDIR += pbseqan
SUBDIR += pear-merger
SUBDIR += phrap
SUBDIR += phred
SUBDIR += phylip
SUBDIR += phyml
SUBDIR += plinkseq
SUBDIR += primer3
SUBDIR += prodigal
SUBDIR += prodigy-lig
SUBDIR += protomol
SUBDIR += psi88
SUBDIR += py-Genesis-PyAPI
SUBDIR += py-biom-format
SUBDIR += py-biopython
SUBDIR += py-bx-python
SUBDIR += py-cutadapt
SUBDIR += py-dnaio
SUBDIR += py-fastTSNE
SUBDIR += py-gffutils
SUBDIR += py-gtfparse
SUBDIR += py-loompy
SUBDIR += py-macs2
SUBDIR += py-multiqc
SUBDIR += py-orange3-bioinformatics
SUBDIR += py-orange3-single-cell
SUBDIR += py-pyfaidx
SUBDIR += py-pysam
SUBDIR += py-xenaPython
SUBDIR += pycogent
SUBDIR += pyfasta
SUBDIR += python-nexus
SUBDIR += rainbow
SUBDIR += recombine
SUBDIR += ruby-bio
SUBDIR += rubygem-bio
SUBDIR += samtools
SUBDIR += seaview
SUBDIR += seqan
SUBDIR += seqan-apps
SUBDIR += seqan1
SUBDIR += seqio
SUBDIR += seqtk
SUBDIR += seqtools
SUBDIR += sim4
SUBDIR += slclust
SUBDIR += smithwaterman
SUBDIR += stacks
SUBDIR += star
SUBDIR += stringtie
SUBDIR += tRNAscan-SE
SUBDIR += t_coffee
SUBDIR += tabixpp
SUBDIR += tophat
SUBDIR += treekin
SUBDIR += treepuzzle
SUBDIR += trimadap
SUBDIR += trimmomatic
SUBDIR += ugene
SUBDIR += unanimity
SUBDIR += vcflib
SUBDIR += vcftools
SUBDIR += velvet
SUBDIR += viennarna
SUBDIR += vsearch
SUBDIR += wise
.include <bsd.port.subdir.mk>
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