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PORTNAME= bcftools
PORTVERSION= 1.15
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Tools for manipulating next-generation sequencing data
WWW= https://www.htslib.org/
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libhts.so:biology/htslib
TEST_DEPENDS= bash:shells/bash
RUN_DEPENDS= bash:shells/bash
USES= autoreconf gmake localbase perl5 python:env shebangfix
USE_GITHUB= yes
USE_PERL5= test
GH_ACCOUNT= samtools
GNU_CONFIGURE= yes
SHEBANG_FILES= misc/* test/test.pl
OPTIONS_DEFINE= GPL
GPL_DESC= Enable modules that rely on GPL code
OPTIONS_DEFAULT= GPL
GPL_LIB_DEPENDS= libgsl.so:math/gsl
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MGPL}
MAKE_ENV+= USE_GPL=1
LICENSE+= GPLv3
LICENSE_COMB= multi
.endif
TEST_TARGET= test
pre-configure:
@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \
${WRKSRC}/configure.ac
post-install:
${MV} ${STAGEDIR}${PREFIX}/bin/color-chrs.pl \
${STAGEDIR}${PREFIX}/bin/color-chrs
${MV} ${STAGEDIR}${PREFIX}/bin/guess-ploidy.py\
${STAGEDIR}${PREFIX}/bin/guess-ploidy
${MV} /${STAGEDIR}${PREFIX}/bin/plot-roh.py \
${STAGEDIR}${PREFIX}/bin/plot-roh
${MV} ${STAGEDIR}${PREFIX}/bin/run-roh.pl \
${STAGEDIR}${PREFIX}/bin/run-roh
${MV} ${STAGEDIR}${PREFIX}/bin/vcfutils.pl \
${STAGEDIR}${PREFIX}/bin/vcfutils
${MV} ${STAGEDIR}${PREFIX}/bin/plot-vcfstats \
${STAGEDIR}${PREFIX}/bin/
.include <bsd.port.mk>
|
