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PORTNAME= cd-hit
DISTVERSIONPREFIX= V
DISTVERSION= 4.8.1
PORTREVISION= 3
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Clustering and comparing protein or nucleotide sequences
WWW= http://weizhong-lab.ucsd.edu/cd-hit/
LICENSE= GPLv2
USES= gmake shebangfix
USE_GITHUB= yes
GH_ACCOUNT= weizhongli
GH_PROJECT= cdhit
SHEBANG_FILES= ${WRKSRC}/*.pl
.if exists(/usr/include/omp.h)
MAKE_FLAGS= openmp=yes
.else
MAKE_FLAGS= openmp=no
.endif
post-patch:
@${REINPLACE_CMD} \
-e 's|/bin/bash|${LOCALBASE}/bin/bash|g' \
${WRKSRC}/cd-hit-2d-para.pl \
${WRKSRC}/cd-hit-para.pl
post-install:
@cd ${STAGEDIR}${PREFIX}/bin && \
${STRIP_CMD} cd-hit cd-hit-2d cd-hit-454 \
cd-hit-div cd-hit-est cd-hit-est-2d
.include <bsd.port.mk>
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