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# Created by: Johann Visagie <johann@egenetics.com>
PORTNAME= fasta
PORTVERSION= 21.1.1
CATEGORIES= biology
MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta2/ \
ftp://ftp.ebi.ac.uk/pub/software/unix/fasta/fasta2/
EXTRACT_SUFX= .shar.Z
MAINTAINER= ports@FreeBSD.org
COMMENT= Collection of programs for searching DNA and protein databases
# Converted from NO_CDROM
LICENSE= FASTA
LICENSE_NAME= fasta
LICENSE_TEXT= May not be sold or incorporated into a commercial product
LICENSE_PERMS= dist-mirror pkg-mirror auto-accept
CONFLICTS_INSTALL= align
WRKSRC= ${WRKDIR}/fasta
SUB_FILES= pkg-message
MAN_FILES= align.1 fasta.1 lalign.1 prdf.1 prss.1 randseq.1 ssearch.1
PORTDOCS= COPYRIGHT README.versions fasta20.doc fasta20.me format.doc \
readme.*
OPTIONS_DEFINE= DOCS
do-extract:
@ ${RM} -r ${WRKDIR}
@ ${MKDIR} ${WRKSRC}
@ for f in ${EXTRACT_ONLY}; do \
cd ${WRKSRC} && (${GZCAT} ${DISTDIR}/$${f} | ${SH} >/dev/null); \
done
post-patch:
@${REINPLACE_CMD} 's|BIN)|DESTDIR)$$(&|' ${WRKSRC}/Makefile
post-install:
${INSTALL_MAN} ${MAN_FILES:S,^,${WRKSRC}/,} \
${STAGEDIR}${MAN1PREFIX}/man/man1
.for mlink in tfasta lfasta plfasta fastx tfastx
${LN} -s fasta.1.gz ${STAGEDIR}${MAN1PREFIX}/man/man1/${mlink}.1.gz
.endfor
${LN} -s align.1.gz ${STAGEDIR}${MAN1PREFIX}/man/man1/align0.1.gz
${LN} -s align.1.gz ${STAGEDIR}${MAN1PREFIX}/man/man1/plalign.1.gz
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
.include <bsd.port.mk>
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