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PORTNAME= gcta
DISTVERSION= 1.26.0
PORTREVISION= 4
CATEGORIES= biology
MASTER_SITES= https://cnsgenomics.com/software/gcta/pre_gcta/:main \
https://gitlab.com/libeigen/eigen/-/archive/${EIGEN_VERSION}/:eigen
DISTFILES= ${PORTNAME}_${DISTVERSION}_src${EXTRACT_SUFX}:main \
eigen-${EIGEN_VERSION}.tar.gz:eigen
MAINTAINER= jwb@FreeBSD.org
COMMENT= Genome-wide Complex Trait Analysis
WWW= https://cnsgenomics.com/software/gcta/index.html
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/GNU_General_Public_License_v3.txt
LIB_DEPENDS= libopenblas.so:math/openblas
USES= compiler:c++11-lang dos2unix gmake localbase:ldflags zip
CXXFLAGS+= -I${WRKDIR}/eigen-${EIGEN_VERSION} -fopenmp
LDFLAGS+= -lopenblas
INSTALL_TARGET= install-strip
PLIST_FILES= bin/gcta
EIGEN_VERSION= 3.3.9
do-extract:
@${UNZIP_NATIVE_CMD} -d ${WRKSRC} ${DISTDIR}/${PORTNAME}_${DISTVERSION}_src${EXTRACT_SUFX}
@cd ${WRKDIR} && \
${TAR} xzf ${DISTDIR}/eigen-${EIGEN_VERSION}.tar.gz
.include <bsd.port.mk>
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