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PORTNAME= locarna
DISTVERSION= 2.0.0
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= https://github.com/s-will/LocARNA/releases/download/v${DISTVERSION}/
MAINTAINER= yuri@FreeBSD.org
COMMENT= LocARNA provides several tools for the structural analysis of RNA
WWW= https://github.com/s-will/LocARNA
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/COPYING
BUILD_DEPENDS= ${LOCALBASE}/lib/libRNA.a:biology/viennarna
LIB_DEPENDS= libgmp.so:math/gmp \
libgsl.so:math/gsl \
libmpfr.so:math/mpfr
TEST_DEPENDS= bash:shells/bash \
catch>0:devel/catch
USES= autoreconf gmake libtool perl5 pkgconfig shebangfix
USE_LDCONFIG= yes
USE_CXXSTD= c++14 # workaround for https://github.com/s-will/LocARNA/issues/82 (LocARNA uses the removed STL method)
CXXFLAGS+= -I${LOCALBASE}/include/catch2 # use external catch
SHEBANG_FILES= src/Utils/locarna_mcc \
src/Tests/test_programs
GNU_CONFIGURE= yes
GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
INSTALL_TARGET= install-strip
TEST_TARGET= check # one test fails, see https://github.com/s-will/LocARNA/issues/81
post-extract: # unbundle catch, see https://github.com/s-will/LocARNA/issues/80
@${RM} ${WRKSRC}/src/Tests/catch.hpp
.include <bsd.port.mk>
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