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PORTNAME= BioPerl-Run
PORTVERSION= 1.007003
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
PKGNAMEPREFIX= p5-
MAINTAINER= sunpoet@FreeBSD.org
COMMENT= Wrapper modules for common bioinformatics tools
WWW= https://github.com/bioperl/bioperl-run
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE_ART10= ${WRKSRC}/LICENSE
BUILD_DEPENDS= ${RUN_DEPENDS}
RUN_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
p5-Bio-Cluster>=0:biology/p5-Bio-Cluster \
p5-Bio-FeatureIO>=0:biology/p5-Bio-FeatureIO \
p5-BioPerl>=1.007000:biology/p5-BioPerl \
p5-Config-Any>=0:devel/p5-Config-Any \
p5-File-Sort>=0:misc/p5-File-Sort \
p5-IO-String>=0:devel/p5-IO-String \
p5-IPC-Run>=0:devel/p5-IPC-Run \
p5-XML-Twig>=0:textproc/p5-XML-Twig
OPTIONS_DEFINE= DOCS
USES= perl5 shebangfix
USE_PERL5= modbuild
NO_ARCH= yes
SHEBANG_FILES= scripts/*
post-install:
.for i in multi_hmmsearch panalysis papplmaker run_neighbor run_protdist
${INSTALL_SCRIPT} ${WRKSRC}/scripts/${i}.PLS ${STAGEDIR}${PREFIX}/bin/bp_${i}
.endfor
post-install-DOCS-on:
@${MKDIR} ${STAGEDIR}${DOCSDIR}
cd ${WRKSRC} && ${INSTALL_DATA} AUTHORS Changes INSTALL.PROGRAMS README.md ${STAGEDIR}${DOCSDIR}
.include <bsd.port.mk>
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