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PORTNAME= plink
DISTVERSIONPREFIX= v
DISTVERSION= 1.90b6.17
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= mzaki@e-mail.ne.jp
COMMENT= Whole genome association analysis toolset
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
NOT_FOR_ARCHS= aarch64 mips64 powerpc64 powerpc64le sparc64
NOT_FOR_ARCHS_REASON= 64bit code requires SSE2 instructions
USES= gmake fortran
USE_GITHUB= yes
GH_ACCOUNT= chrchang
GH_PROJECT= plink-ng
GH_TAGNAME= 79b2df8c
WRKSRC_SUBDIR= 1.9
MAKEFILE= Makefile.std
MAKE_ARGS= ZLIB=-lz BLASFLAGS="${BLASLIB} ${LAPACKLIB}"
CFLAGS+= -DDYNAMIC_ZLIB -I${LOCALBASE}/include
LDFLAGS+= -lthr
INSTALL_TARGET= install-strip
CONFLICTS_INSTALL= putty putty-nogtk # bin/plink
OPTIONS_DEFINE= EXAMPLES
OPTIONS_SINGLE= BLAS
OPTIONS_SINGLE_BLAS= NETLIB OPENBLAS
OPTIONS_DEFAULT= OPENBLAS
BLAS_DESC= BLAS/LAPACK implementation
OPENBLAS_USES= blaslapack:openblas
NETLIB_DESC= Netlib's reference
NETLIB_USES= blaslapack:netlib
NETLIB_LIB_DEPENDS= libcblas.so:math/cblas
NETLIB_LDFLAGS= -lcblas
EXAMPLES= toy.map toy.ped
post-build:
(cd ${WRKSRC}; ${CC} ${CFLAGS} prettify.c -o prettify)
post-install:
${INSTALL_PROGRAM} ${WRKSRC}/prettify ${STAGEDIR}${PREFIX}/bin
post-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/,} ${STAGEDIR}${EXAMPLESDIR}
.include <bsd.port.mk>
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