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PORTNAME= gffutils
DISTVERSION= 0.11.1
CATEGORIES= biology python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Work with GFF and GTF files in a flexible database framework
WWW= https://github.com/daler/gffutils
LICENSE= MIT
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}argcomplete>=1.9.4:devel/py-argcomplete@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}argh>=0.26.2:devel/py-argh@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pyfaidx>=0.5.5.2:biology/py-pyfaidx@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}simplejson>0:devel/py-simplejson@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}six>=1.12.0:devel/py-six@${PY_FLAVOR}
USES= python:3.6+
USE_PYTHON= distutils concurrent autoplist pytest # tests use nose and therefore don't work, see https://github.com/daler/gffutils/issues/211
NO_ARCH= yes
.include <bsd.port.mk>
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