blob: 745a4a165ed182961a3d02cc74ac4168054a3bc9 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
PORTNAME= pysam
DISTVERSIONPREFIX= v
DISTVERSION= 0.22.1
CATEGORIES= biology python
#MASTER_SITES= PYPI # no tests
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Python module for reading, manipulating and writing genomic data sets
WWW= https://github.com/pysam-developers/pysam
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libhts.so:biology/htslib
RUN_DEPENDS= bcftools:biology/bcftools \
samtools:biology/samtools
USES= gmake python
USE_PYTHON= distutils autoplist cython cython_run pytest # 2 failed, 155 errors, see https://github.com/pysam-developers/pysam/issues/1284
USE_GITHUB= yes
GH_ACCOUNT= pysam-developers
BINARY_ALIAS= make=${GMAKE}
MAKE_ENV= HTSLIB_MODE=external \
HTSLIB_LIBRARY_DIR=${LOCALBASE}/lib \
HTSLIB_INCLUDE_DIR=${LOCALBASE}/include
TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
TEST_WRKSRC= ${WRKSRC}/tests
post-install:
@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so
.include <bsd.port.mk>
|
