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PORTNAME= samtools
DISTVERSION= 1.16.1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Tools for manipulating next-generation sequencing data
WWW= https://www.htslib.org/
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libhts.so:biology/htslib
TEST_DEPENDS= bash:shells/bash
USES= autoreconf gmake localbase ncurses perl5 python:env shebangfix
USE_GITHUB= yes
USE_PERL5= test
GNU_CONFIGURE= yes
SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl
TEST_TARGET= test
.include <bsd.port.mk>
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