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# New ports collection makefile for: t_coffee
# Date created: 27 June 2001
# Whom: Johann Visagie <wjv@FreeBSD.org>
#
# $FreeBSD$
#
PORTNAME= t_coffee
PORTVERSION= 1.37
CATEGORIES= biology
MASTER_SITES= http://igs-server.cnrs-mrs.fr/~cnotred/Packages/
DISTNAME= T-COFFEE_distribution
MAINTAINER= wjv@FreeBSD.org
COMMENT= A multiple DNA or protein sequence alignment package
BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw
RUN_DEPENDS= ${BUILD_DEPENDS}
WRKSRC= ${WRKDIR}/${DISTNAME}_Version_${PORTVERSION}
BUILD_WRKSRC= ${WRKSRC}/t_coffee_source
MAKE_ENV= MV=${MV} USER_BIN=${LOCALBASE}/bin \
CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw
MAKEFILE= makefile
PKGMESSAGE= ${WRKDIR}/pkg-message
post-build:
@ cd ${WRKSRC}/lalign && ${SETENV} ${MAKE_ENV} ${MAKE} \
${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET}
.include <bsd.port.pre.mk>
do-install:
.for binfile in t_coffee_source/t_coffee lalign/lalign2list
@ ${INSTALL_PROGRAM} ${WRKSRC}/${binfile} ${PREFIX}/bin
.endfor
.for scriptfile in extract_from_pdb mocca
@ ${INSTALL_SCRIPT} ${WRKSRC}/bin/${scriptfile} ${PREFIX}/bin
.endfor
post-install:
@ ${MKDIR} ${DATADIR}
@ ${INSTALL_DATA} ${WRKSRC}/html/* ${DATADIR}
.if !defined(NOPORTDOCS)
@ ${MKDIR} ${DOCSDIR}
@ ${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR}
@ ${MKDIR} ${EXAMPLESDIR}
@ ${RMDIR} ${WRKSRC}/example/aln 2>/dev/null || ${TRUE}
@ cd ${WRKSRC}/example && find * \
| cpio --quiet -pdum -R ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR}
@ ${SED} -e 's#%%DATADIR%%#${DATADIR}#' ${.CURDIR}/pkg-message \
> ${PKGMESSAGE}
.if !defined(BATCH)
@ ${CAT} ${PKGMESSAGE}
.endif
.endif
.include <bsd.port.post.mk>
|
