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PORTNAME= vcflib
DISTVERSIONPREFIX= v
DISTVERSION= 1.0.3
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= C++ library and CLI tools for parsing and manipulating VCF files
LICENSE= MIT
LIB_DEPENDS= libhts.so:biology/htslib \
libtabix.so:biology/tabixpp
USES= cmake localbase:ldflags pkgconfig python shebangfix
USE_GITHUB= yes
GH_ACCOUNT= ekg
GH_TUPLE= ekg:fastahack:bb33265:fastahack/fastahack \
ekg:filevercmp:1a9b779:filevercmp/filevercmp \
ekg:fsom:a6ef318:fsom/fsom \
google:googletest:d225acc:googletest/googletest \
ekg:intervaltree:aa59377:intervaltree/intervaltree \
edawson:libVCFH:44b6580:libVCFH/libVCFH \
ekg:multichoose:68733cd:multichoose/multichoose \
ekg:smithwaterman:2610e25:smithwaterman/smithwaterman \
simd-everywhere:simde-no-tests:9af03cd:simd/src/simde
SHEBANG_FILES= scripts/*
# Clang and GCC disable sse2 by default on i386, but it's required for vcflib
CFLAGS_i386= -msse2
CONFLICTS_INSTALL= filevercmp libdisorder # include/disorder.h include/filevercmp.h include/pdflib.hpp
.include <bsd.port.mk>
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