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PORTNAME= dipy
DISTVERSION= 1.8.0
CATEGORIES= science python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Python toolbox for analysis of MR diffusion imaging
WWW= https://dipy.org/
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \
${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}trx-python>0:science/py-trx-python@${PY_FLAVOR}
BUILD_DEPENDS= ${PY_DEPENDS} \
${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
RUN_DEPENDS= ${PY_DEPENDS}
TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}statsmodels>0:math/py-statsmodels@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} # "ml" extra dependencies, see dipy/info.py
TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}fury>0:graphics/py-fury@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} # "viz" extra dependencies, see dipy/info.py
TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}cvxpy>0:math/py-cvxpy@${PY_FLAVOR} # "doc" extra dependencies, see dipy/info.py
USES= python shebangfix
USE_PYTHON= pep517 concurrent cython pytest # autoplist is broken: it produces incorrect entries and unnecessary files are also placed under doc/
SHEBANG_GLOB= *.sh *.py
TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
post-install:
# strip binaries
@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*/*.so
# remove doc files
@${RM} -rf ${STAGEDIR}${PREFIX}/doc
do-test:
cd ${WRKSRC} && ${SETENV} ${TEST_ENV} tools/ci/run_tests.sh
.include <bsd.port.mk>
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