biology/htslib: Update to 1.12

biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.11

Build-tested all other htslib dependents, no revbumps should be needed

Reported by:    portscout

1 files changed, 0 insertions, 20 deletions

diff --git a/biology/bcftools/files/patch-test_test.pl b/biology/bcftools/files/patch-test_test.pl
deleted file mode 100644
index 39ccb4466b54..000000000000
--- a/biology/bcftools/files/patch-test_test.pl
+++ /dev/null
@@ -1,20 +0,0 @@
---- test/test.pl.orig	2020-10-18 13:36:42 UTC
-+++ test/test.pl
-@@ -1236,7 +1236,7 @@ sub test_usage
-     my $command = $args{cmd};
-     my $commandpath = $$opts{bin}."/".$command;
-     my ($ret,$out) = _cmd("$commandpath $args{redirection} 2>&1");
--    if ( $out =~ m/\/bin\/bash.*no.*such/i ) { failed($opts,$test,"could not run $commandpath: $out"); return; }
-+    if ( $out =~ m/bash.*no.*such/i ) { failed($opts,$test,"could not run $commandpath: $out"); return; }
- 
-     my @sections = ($out =~ m/(^[A-Za-z]+.*?)(?:(?=^[A-Za-z]+:)|\z)/msg);
- 
-@@ -1291,7 +1291,7 @@ sub test_usage_subcommand
-     my $subcommand = $args{subcmd};
-     my $commandpath = $$opts{bin}."/".$command;
-     my ($ret,$out) = _cmd("$commandpath $subcommand $args{redirection} 2>&1");
--    if ( $out =~ m/\/bin\/bash.*no.*such/i ) { failed($opts,$test,"could not run $commandpath $subcommand: $out"); return; }
-+    if ( $out =~ m/bash.*no.*such/i ) { failed($opts,$test,"could not run $commandpath $subcommand: $out"); return; }
- 
-     my @sections = ($out =~ m/(^[A-Za-z]+.*?)(?:(?=^[A-Za-z]+:)|\z)/msg);
-