diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2022-02-03 12:37:38 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2022-02-03 12:37:38 +0000 |
| commit | 2b1ef5b34e0ee73661c0b9755f4e6806de1095d5 (patch) | |
| tree | da40f8a2a0bd5f486a12436651fc0899ab0ebced /biology | |
| parent | 714d30ce9a6a72a515e6e3a243450c7a576e8e2a (diff) | |
biology/py-dna-features-viewer: Python lib to visualize DNA features
DNA Features Viewer is a Python library to visualize DNA features, e.g.
from GenBank or Gff files.
DNA Features Viewer can plot sequence maps linearly or circularly, with
or without nucleotide sequence and amino-acid sequences. The plotter
automatically produces clear plots even for sequences with many
overlapping features and long labels. The library plays well with
Matplotlib and Biopython, and the figures can be saved in different
formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS
interfaces.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/py-dna-features-viewer/Makefile | 20 | ||||
| -rw-r--r-- | biology/py-dna-features-viewer/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-dna-features-viewer/pkg-descr | 12 |
3 files changed, 35 insertions, 0 deletions
diff --git a/biology/py-dna-features-viewer/Makefile b/biology/py-dna-features-viewer/Makefile new file mode 100644 index 000000000000..7ea1d63d46e6 --- /dev/null +++ b/biology/py-dna-features-viewer/Makefile @@ -0,0 +1,20 @@ +PORTNAME= dna-features-viewer +DISTVERSION= 3.1.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +DISTNAME= dna_features_viewer-${PORTVERSION} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python library to visualize DNA features, e.g. GenBank or Gff files + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENCE.txt + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist distutils + +.include <bsd.port.mk> diff --git a/biology/py-dna-features-viewer/distinfo b/biology/py-dna-features-viewer/distinfo new file mode 100644 index 000000000000..8131a2c7de96 --- /dev/null +++ b/biology/py-dna-features-viewer/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1643841661 +SHA256 (dna_features_viewer-3.1.0.tar.gz) = 1430bbd861b4fa4a1855fb9554577bc1b2e969a6d1921882bb2de56902cd63ca +SIZE (dna_features_viewer-3.1.0.tar.gz) = 34795 diff --git a/biology/py-dna-features-viewer/pkg-descr b/biology/py-dna-features-viewer/pkg-descr new file mode 100644 index 000000000000..367dce2c930c --- /dev/null +++ b/biology/py-dna-features-viewer/pkg-descr @@ -0,0 +1,12 @@ +DNA Features Viewer is a Python library to visualize DNA features, e.g. +from GenBank or Gff files. + +DNA Features Viewer can plot sequence maps linearly or circularly, with +or without nucleotide sequence and amino-acid sequences. The plotter +automatically produces clear plots even for sequences with many +overlapping features and long labels. The library plays well with +Matplotlib and Biopython, and the figures can be saved in different +formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS +interfaces. + +WWW: https://pypi.python.org/project/dna-features-viewer/ |