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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2024-02-16 13:42:11 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2024-02-16 13:42:11 +0000 |
| commit | 306ace396259a771b353a17bffd1e8465c2ac89d (patch) | |
| tree | 73bc467894aa6c2f33a1507509f72285ab6f136c /biology | |
| parent | c897a4659f65d38a38b09abafe248db71d5430ec (diff) | |
| download | ports-306ace396259a771b353a17bffd1e8465c2ac89d.tar.gz ports-306ace396259a771b353a17bffd1e8465c2ac89d.zip | |
biology/biostar-tools: Update to 1.10.1_3
Add sra-tools to metaport deps on aarch64
Clean up pkg-desc
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/biostar-tools/Makefile | 6 | ||||
| -rw-r--r-- | biology/biostar-tools/distinfo | 2 | ||||
| -rw-r--r-- | biology/biostar-tools/pkg-descr | 25 |
3 files changed, 18 insertions, 15 deletions
diff --git a/biology/biostar-tools/Makefile b/biology/biostar-tools/Makefile index b8cca93134d8..8163303759cf 100644 --- a/biology/biostar-tools/Makefile +++ b/biology/biostar-tools/Makefile @@ -1,6 +1,6 @@ PORTNAME= biostar-tools PORTVERSION= 1.10.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= biology python MAINTAINER= jwb@FreeBSD.org @@ -71,8 +71,8 @@ USES= metaport python .include <bsd.port.pre.mk> -# Allow pkg build on non-amd64 systems until sra-tools supports them -.if ${ARCH} == amd64 +# sra-tools is only supported on specific architectures +.if ${ARCH} == amd64 || ${ARCH} == aarch64 RUN_DEPENDS+= sra-tools>0:biology/sra-tools .endif diff --git a/biology/biostar-tools/distinfo b/biology/biostar-tools/distinfo index 2d706e980f0b..04755b578d3c 100644 --- a/biology/biostar-tools/distinfo +++ b/biology/biostar-tools/distinfo @@ -1 +1 @@ -TIMESTAMP = 1638373720 +TIMESTAMP = 1708090899 diff --git a/biology/biostar-tools/pkg-descr b/biology/biostar-tools/pkg-descr index eaf4acea11eb..41a5f646b935 100644 --- a/biology/biostar-tools/pkg-descr +++ b/biology/biostar-tools/pkg-descr @@ -1,16 +1,19 @@ -Biostar-Tools is a metaport for installing all the tools necessary to work -through the Biostar Handbook, except for bedGrapToBigWig, which has license -restrictions. If you need bedGraphToBigWig, run +Biostar-Tools is a metaport for installing all the tools necessary to +work through the Biostar Handbook, except for bedGrapToBigWig, which +has license restrictions. If you need bedGraphToBigWig, run cd /usr/ports/biology/ucsc-userapps && make install clean -The handbook instructs the user to install these tools mostly via bioconda, -which then requires the user to activate the bioconda environment each time -they want to use the tools. This meta-package installs all of the tools -except emboss to the default PATH so they just work without any special -environment. Emboss commands are installed to /usr/local/emboss/bin due to -conflicts with other packages. - -You can also install conda packages on FreeBSD. For details, see +The handbook instructs the reader to install these tools mostly via +bioconda, which then requires the user to activate the bioconda +environment each time they want to use the tools. You can also +install conda packages on FreeBSD if you wish. For details, see /usr/ports/sysutils/linux-miniconda-installer/pkg-descr + +This meta-package installs all of the tools except emboss to the +default PATH (normally /usr/local/bin) so they just work without any +special environment. Emboss commands are installed to +/usr/local/emboss/bin due to conflicts with other packages. Run +"biostar-shell" to add the emboss commands to your PATH, and simply +exit the shell to return your PATH to normal. |