diff options
| author | Wen Heping <wen@FreeBSD.org> | 2013-07-20 10:04:32 +0000 |
|---|---|---|
| committer | Wen Heping <wen@FreeBSD.org> | 2013-07-20 10:04:32 +0000 |
| commit | 881d1953d700656e61fffc9e967017af0390c813 (patch) | |
| tree | 3813f5d106ce334916d06d2fba6c328191f8a8d4 /biology | |
| parent | 75445be75e27236438a92497876dc0858d664270 (diff) | |
| download | ports-881d1953d700656e61fffc9e967017af0390c813.tar.gz ports-881d1953d700656e61fffc9e967017af0390c813.zip | |
- Update to 0.56
Notes
Notes:
svn path=/head/; revision=323340
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/p5-Bio-Phylo/Makefile | 8 | ||||
| -rw-r--r-- | biology/p5-Bio-Phylo/distinfo | 4 | ||||
| -rw-r--r-- | biology/p5-Bio-Phylo/pkg-plist | 4 |
3 files changed, 13 insertions, 3 deletions
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile index de3ab85500cc..7affa42f5e08 100644 --- a/biology/p5-Bio-Phylo/Makefile +++ b/biology/p5-Bio-Phylo/Makefile @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= Bio-Phylo -PORTVERSION= 0.52 +PORTVERSION= 0.56 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- @@ -52,10 +52,13 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Matrices::Datatype::Continuous.3 \ Bio::Phylo::Matrices::Datatype::Custom.3 \ Bio::Phylo::Matrices::Datatype::Dna.3 \ + Bio::Phylo::Matrices::Datatype::Illumina.3 \ Bio::Phylo::Matrices::Datatype::Mixed.3 \ Bio::Phylo::Matrices::Datatype::Protein.3 \ Bio::Phylo::Matrices::Datatype::Restriction.3 \ Bio::Phylo::Matrices::Datatype::Rna.3 \ + Bio::Phylo::Matrices::Datatype::Sanger.3 \ + Bio::Phylo::Matrices::Datatype::Solexa.3 \ Bio::Phylo::Matrices::Datatype::Standard.3 \ Bio::Phylo::Matrices::Datum.3 \ Bio::Phylo::Matrices::DatumRole.3 \ @@ -77,6 +80,7 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Parsers::Abstract.3 \ Bio::Phylo::Parsers::Adjacency.3 \ Bio::Phylo::Parsers::Fasta.3 \ + Bio::Phylo::Parsers::Fastq.3 \ Bio::Phylo::Parsers::Figtree.3 \ Bio::Phylo::Parsers::Json.3 \ Bio::Phylo::Parsers::Newick.3 \ @@ -133,10 +137,12 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Unparsers::Rss1.3 \ Bio::Phylo::Unparsers::Taxlist.3 \ Bio::Phylo::Util::CONSTANT.3 \ + Bio::Phylo::Util::CONSTANT::Int.3 \ Bio::Phylo::Util::Dependency.3 \ Bio::Phylo::Util::Exceptions.3 \ Bio::Phylo::Util::IDPool.3 \ Bio::Phylo::Util::Logger.3 \ + Bio::Phylo::Util::MOP.3 \ Bio::Phylo::Util::OptionalInterface.3 \ Bio::Phylo::Util::StackTrace.3 \ Bio::PhyloRole.3 diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo index 2c252b8dad94..e1a8af4831ad 100644 --- a/biology/p5-Bio-Phylo/distinfo +++ b/biology/p5-Bio-Phylo/distinfo @@ -1,2 +1,2 @@ -SHA256 (Bio-Phylo-0.52.tar.gz) = 5c023acc76fb643581bc3612a80e9081ad1a795270bbc02a15f4460637c526c3 -SIZE (Bio-Phylo-0.52.tar.gz) = 398024 +SHA256 (Bio-Phylo-0.56.tar.gz) = f10e7d4c24911c18f0f055b1f2f910507a34b1256e1bdaf139bd502368240bd9 +SIZE (Bio-Phylo-0.56.tar.gz) = 472198 diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist index 6738dcdfc522..ccacd31eb8dc 100644 --- a/biology/p5-Bio-Phylo/pkg-plist +++ b/biology/p5-Bio-Phylo/pkg-plist @@ -22,10 +22,13 @@ %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Continuous.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Custom.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Dna.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Illumina.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Mixed.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Protein.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Restriction.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Rna.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Sanger.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Solexa.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Standard.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm %%SITE_PERL%%/Bio/Phylo/Matrices/DatumRole.pm @@ -53,6 +56,7 @@ %%SITE_PERL%%/Bio/Phylo/Parsers/Abstract.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Adjacency.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Fasta.pm +%%SITE_PERL%%/Bio/Phylo/Parsers/Fastq.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Figtree.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Json.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm |