diff options
Diffstat (limited to 'biology')
28 files changed, 14 insertions, 14 deletions
diff --git a/biology/coalesce/Makefile b/biology/coalesce/Makefile index 7dd0ff4bdbc0..9ab00a08e28a 100644 --- a/biology/coalesce/Makefile +++ b/biology/coalesce/Makefile @@ -13,6 +13,7 @@ DISTNAME= ${PORTNAME} EXTRACT_SUFX= .tar.Z MAINTAINER= wjv@FreeBSD.org +COMMENT= A program to fit population models NO_WRKSUBDIR= yes ALL_TARGET= ${PORTNAME} diff --git a/biology/coalesce/pkg-comment b/biology/coalesce/pkg-comment deleted file mode 100644 index 8e9f159f703c..000000000000 --- a/biology/coalesce/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A program to fit population models diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile index 1fece8dd82b9..c847e0ad7627 100644 --- a/biology/emboss/Makefile +++ b/biology/emboss/Makefile @@ -16,6 +16,7 @@ DIST_SUBDIR= ${PORTNAME} EXTRACT_ONLY= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX} MAINTAINER= wjv@FreeBSD.org +COMMENT= A collection of open source tools for genetic sequence analysis LIB_DEPENDS= gd.2:${PORTSDIR}/graphics/gd diff --git a/biology/emboss/pkg-comment b/biology/emboss/pkg-comment deleted file mode 100644 index 5b05a785f6fc..000000000000 --- a/biology/emboss/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A collection of open source tools for genetic sequence analysis diff --git a/biology/fasta/Makefile b/biology/fasta/Makefile index cc5e4089b90e..839caa26c8a1 100644 --- a/biology/fasta/Makefile +++ b/biology/fasta/Makefile @@ -13,6 +13,7 @@ DISTNAME= fasta${PORTVERSION:S/.//g} EXTRACT_SUFX= .shar.Z MAINTAINER= wjv@FreeBSD.org +COMMENT= A collection of programs for searching DNA and protein databases NO_CDROM= May not be sold or incorporated into a commercial product WRKSRC= ${WRKDIR}/fasta diff --git a/biology/fasta/pkg-comment b/biology/fasta/pkg-comment deleted file mode 100644 index b4e576aaaea1..000000000000 --- a/biology/fasta/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A collection of programs for searching DNA and protein databases diff --git a/biology/fasta3/Makefile b/biology/fasta3/Makefile index 3c0523f5afab..25dcad20ddcf 100644 --- a/biology/fasta3/Makefile +++ b/biology/fasta3/Makefile @@ -13,6 +13,7 @@ DISTNAME= fasta${PORTVERSION:S/.//g} EXTRACT_SUFX= .shar.Z MAINTAINER= wjv@FreeBSD.org +COMMENT= A collection of programs for searching DNA and protein databases, v3 NO_CDROM= May not be sold or incorporated into a commercial product WRKSRC= ${WRKDIR}/fasta3 diff --git a/biology/fasta3/pkg-comment b/biology/fasta3/pkg-comment deleted file mode 100644 index 20092179946a..000000000000 --- a/biology/fasta3/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A collection of programs for searching DNA and protein databases, v3 diff --git a/biology/fluctuate/Makefile b/biology/fluctuate/Makefile index 551298c13b85..abc0950132a2 100644 --- a/biology/fluctuate/Makefile +++ b/biology/fluctuate/Makefile @@ -13,6 +13,7 @@ DISTNAME= ${PORTNAME} EXTRACT_SUFX= .tar.Z MAINTAINER= wjv@FreeBSD.org +COMMENT= A program to fit population models NO_WRKSUBDIR= yes ALL_TARGET= ${PORTNAME} diff --git a/biology/fluctuate/pkg-comment b/biology/fluctuate/pkg-comment deleted file mode 100644 index 8e9f159f703c..000000000000 --- a/biology/fluctuate/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A program to fit population models diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index 92658fd19195..331931775dc7 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -13,6 +13,7 @@ MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/${VERSIONSTRING}/ DISTNAME= ${PORTNAME}-${VERSIONSTRING} MAINTAINER= wjv@FreeBSD.org +COMMENT= Profile hidden Markov models for biological sequence analysis GNU_CONFIGURE= yes USE_PERL5= yes diff --git a/biology/hmmer/pkg-comment b/biology/hmmer/pkg-comment deleted file mode 100644 index fe4433a6b575..000000000000 --- a/biology/hmmer/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Profile hidden Markov models for biological sequence analysis diff --git a/biology/lamarc/Makefile b/biology/lamarc/Makefile index 38dc0c528979..9fa785a587aa 100644 --- a/biology/lamarc/Makefile +++ b/biology/lamarc/Makefile @@ -13,6 +13,7 @@ DISTFILES= # none EXTRACT_ONLY= # empty MAINTAINER= wjv@FreeBSD.org +COMMENT= A package of programs for computing population parameters RUN_DEPENDS= coalesce:${PORTSDIR}/biology/coalesce \ fluctuate:${PORTSDIR}/biology/fluctuate \ diff --git a/biology/lamarc/pkg-comment b/biology/lamarc/pkg-comment deleted file mode 100644 index 65c98d705236..000000000000 --- a/biology/lamarc/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A package of programs for computing population parameters diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile index e5741f073751..3af3e84a2889 100644 --- a/biology/migrate/Makefile +++ b/biology/migrate/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/ DISTNAME= ${PORTNAME}-${PORTVERSION}.src MAINTAINER= wjv@FreeBSD.org +COMMENT= A program to estimate population sizes and migration rates WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} CONFIGURE_WRKSRC= ${WRKSRC}/src diff --git a/biology/migrate/pkg-comment b/biology/migrate/pkg-comment deleted file mode 100644 index 1cf2d7f16689..000000000000 --- a/biology/migrate/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A program to estimate population sizes and migration rates diff --git a/biology/p5-bioperl-devel/Makefile b/biology/p5-bioperl-devel/Makefile index dfedb429f9fb..ca7a2c0c5390 100644 --- a/biology/p5-bioperl-devel/Makefile +++ b/biology/p5-bioperl-devel/Makefile @@ -15,6 +15,7 @@ PKGNAMESUFFIX= -devel DISTFILES= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= wjv@FreeBSD.org +COMMENT= A collection of Perl modules for bioinformatics (developer's release) # These are all run-time dependencies, but listing them in ${BUILD_DEPENDS} # prevents a flood of build-time warnings. diff --git a/biology/p5-bioperl-devel/pkg-comment b/biology/p5-bioperl-devel/pkg-comment deleted file mode 100644 index bb7e0ab0ff27..000000000000 --- a/biology/p5-bioperl-devel/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A collection of Perl modules for bioinformatics (developer's release) diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile index 669216b4f0b8..28ae5758aaf0 100644 --- a/biology/p5-bioperl/Makefile +++ b/biology/p5-bioperl/Makefile @@ -16,6 +16,7 @@ PKGNAMEPREFIX= p5- DISTFILES= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= wjv@FreeBSD.org +COMMENT= A collection of Perl modules for bioinformatics # These are all run-time dependencies, but listing them in ${BUILD_DEPENDS} # prevents a flood of build-time warnings. diff --git a/biology/p5-bioperl/pkg-comment b/biology/p5-bioperl/pkg-comment deleted file mode 100644 index 6603d94dc286..000000000000 --- a/biology/p5-bioperl/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A collection of Perl modules for bioinformatics diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index baddf2076a49..2c0ba22b639e 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -14,6 +14,7 @@ DISTNAME= ${PORTNAME}-${PORTVERSION:S/.a/a/} DISTFILES= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= wjv@FreeBSD.org +COMMENT= A collection of Python modules for bioinformatics BUILD_DEPENDS= ${PYDISTUTILS} RUN_DEPENDS= ${PYNUMERIC} \ diff --git a/biology/py-biopython/pkg-comment b/biology/py-biopython/pkg-comment deleted file mode 100644 index 0310e64fb4a0..000000000000 --- a/biology/py-biopython/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A collection of Python modules for bioinformatics diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile index 4591e45daf3d..267c761a5647 100644 --- a/biology/pymol/Makefile +++ b/biology/pymol/Makefile @@ -14,6 +14,7 @@ DISTNAME= pymol-${PORTVERSION:S/./_/}-src EXTRACT_SUFX= .tgz MAINTAINER= maho@FreeBSD.org +COMMENT= Free and Open-Source molecular modeling system BUILD_DEPENDS= ${PYNUMERIC} RUN_DEPENDS= ${PYNUMERIC} \ diff --git a/biology/pymol/pkg-comment b/biology/pymol/pkg-comment deleted file mode 100644 index 6c056b09dc9c..000000000000 --- a/biology/pymol/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Free and Open-Source molecular modeling system diff --git a/biology/recombine/Makefile b/biology/recombine/Makefile index 51e89b10632f..bf13cb66ee9f 100644 --- a/biology/recombine/Makefile +++ b/biology/recombine/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/recombine/ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= wjv@FreeBSD.org +COMMENT= A program to fit population models across sites NO_WRKSUBDIR= yes ALL_TARGET= ${PORTNAME} diff --git a/biology/recombine/pkg-comment b/biology/recombine/pkg-comment deleted file mode 100644 index 00509aa636c0..000000000000 --- a/biology/recombine/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A program to fit population models across sites diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile index f1d3ddb63800..7a70657ae5f3 100644 --- a/biology/t_coffee/Makefile +++ b/biology/t_coffee/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://igs-server.cnrs-mrs.fr/~cnotred/Packages/ DISTNAME= T-COFFEE_distribution MAINTAINER= wjv@FreeBSD.org +COMMENT= A multiple DNA or protein sequence alignment package BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw RUN_DEPENDS= ${BUILD_DEPENDS} diff --git a/biology/t_coffee/pkg-comment b/biology/t_coffee/pkg-comment deleted file mode 100644 index c0f726dcae6b..000000000000 --- a/biology/t_coffee/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A multiple DNA or protein sequence alignment package |