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* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-09-211-2/+2
* biology/py-PySCeS: Update 0.9.8a -> 1.0.0Yuri Victorovich2021-09-202-9/+8
* biology/py-libsedml: New port: SED-ML library for PythonYuri Victorovich2021-09-197-0/+89
* biology/libsedml: New port: C++ SED-ML libraryYuri Victorovich2021-09-195-0/+149
* biology/py-libnuml: Fix typoYuri Victorovich2021-09-191-1/+1
* biology/py-libnuml: New port: Numerical Markup Language for PythonYuri Victorovich2021-09-196-0/+68
* biology/libnuml: New port: C++ library for Numerical Markup LanguageYuri Victorovich2021-09-195-0/+80
* biology/seqkit: Update 0.16.1 -> 2.0.1Yuri Victorovich2021-09-182-7/+7
* biology/jellyfish: Switch to static tarball and update license infoJoseph Mingrone2021-09-172-10/+11
* biology/biolibc: Update to 0.2.0.11Jason W. Bacon2021-09-172-5/+5
* biology/ugene: update Unipro UGENE to version 40.0.Alexey Dokuchaev2021-09-164-19/+15
* biology/py-PySCeS: Update 0.9.8post1 -> 0.9.8aYuri Victorovich2021-09-143-5/+19
* biology/hhsuite: Fix build on aarch64Mikael Urankar2021-09-131-1/+3
* biology/mmseqs2: disable on 32-bitsPiotr Kubaj2021-09-121-1/+1
* biology/jellyfish: Fix unused open mode variableJason W. Bacon2021-09-112-0/+12
* biology/htslib: Add CPE informationBernhard Froehlich2021-09-101-1/+1
* biology/biostar-tools: Add biology/sam2pairwise to run depsJason W. Bacon2021-09-072-3/+4
* biology/sam2pairwise: Show pairwise alignment for each read in a SAM fileJason W. Bacon2021-09-075-0/+67
* biology/emboss: Put emboss-shell in default PATHJason W. Bacon2021-09-064-4/+5
* biology/biostar-tools: Add mafft, clustal-omega, pywgsim depsJason W. Bacon2021-09-062-3/+6
* biology/emboss: Add emboss-shell: Run subshell with proper PATHJason W. Bacon2021-09-067-17/+47
* biology/py-pywgsim: Modified wgsim genomic data simulatorJason W. Bacon2021-09-064-0/+26
* biology/ncbi-cxx-toolkit: Broken on 11Yuri Victorovich2021-09-041-0/+2
* *: Clean up some thingsTobias Kortkamp2021-09-031-3/+2
* biology/peak-classifier: Update to 0.1.1.21Jason W. Bacon2021-09-022-5/+5
* biology/biolibc: Update to 0.2.0.1Jason W. Bacon2021-09-022-4/+5
* biology/mothur: Update 1.46.0 -> 1.46.1Yuri Victorovich2021-09-022-4/+4
* biology/biolibc-tools: High-performance tools based on biolibcJason W. Bacon2021-08-305-0/+45
* biology/pooler: Update to 1.78Jason W. Bacon2021-08-282-5/+5
* biology/peak-classifier: Update to 0.1.1.20Jason W. Bacon2021-08-282-4/+5
* biology/vcf2hap: Update to 0.1.3.12Jason W. Bacon2021-08-282-4/+5
* biology/vcf-split: Update to 0.1.2.14Jason W. Bacon2021-08-282-4/+5
* biology/ad2vcf: Update to 0.1.3.31Jason W. Bacon2021-08-282-4/+5
* biology/biolibc: Update to 0.2.0Jason W. Bacon2021-08-284-22/+553
* biology/fastp: Update to 0.22.0Jason W. Bacon2021-08-262-4/+4
* biology/mothur: Update 1.45.3 -> 1.46.0Yuri Victorovich2021-08-262-11/+10
* biology/ncbi-cxx-toolkit: Update 22.0.0 -> 25.0.0Yuri Victorovich2021-08-252-10/+21
* biology/unikmer: Update 0.18.3 -> 0.18.4Yuri Victorovich2021-08-242-6/+6
* biostar-tools: Update to 1.4.0Jason W. Bacon2021-08-242-2/+6
* biology/bfc: Correct sequencing errors from Illumina sequencing dataJason W. Bacon2021-08-236-0/+76
* biology/flash: Fast Length Adjustment of SHort readsJason W. Bacon2021-08-235-0/+57
* biology/minimap2: Add pkg-plist to repoJason W. Bacon2021-08-221-0/+10
* biology/jellyfish: Update to 2.3.0Jason W. Bacon2021-08-226-58/+4
* biology/minimap2: Update to 2.22Jason W. Bacon2021-08-223-10/+16
* biology/bbmap: Update to 38.92Jason W. Bacon2021-08-223-8/+22
* biology/pooler: Update to 1.77Jason W. Bacon2021-08-212-4/+6
* biology/igv: Broken on 11Yuri Victorovich2021-08-211-0/+2
* biology/abyss: Broken on 11Yuri Victorovich2021-08-211-0/+1
* biology/edlib: Update 1.2.6.20201202 -> 1.2.7Yuri Victorovich2021-08-212-5/+5
* biology/hyphy: Update to 2.4.32Joseph Mingrone2021-08-204-32/+6
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