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/
biology
Commit message (
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Author
Age
Files
Lines
*
- LICENSE
Dmitry Marakasov
2016-07-02
2
-10
/
+22
*
biology/diamond: update 0.8.6 -> 0.8.9
Jason Unovitch
2016-06-30
2
-4
/
+4
*
- Add missing dependency, fixing build
Dmitry Marakasov
2016-06-24
1
-1
/
+5
*
- Switch to options helpers
Dmitry Marakasov
2016-06-21
2
-7
/
+11
*
biology/diamond: update to 0.8.6
Ruslan Makhmatkhanov
2016-06-17
2
-4
/
+4
*
- Fix run-time dependency issues
Olivier Duchateau
2016-06-11
1
-2
/
+13
*
biology/seaview: Update version 4.5.4.8=>4.6
Muhammad Moinur Rahman
2016-06-10
2
-7
/
+4
*
Update to 0.8.5
Matthew Seaman
2016-06-09
3
-34
/
+18
*
- Update to 1.35
Wen Heping
2016-06-08
2
-3
/
+4
*
Remove unneeded usage of:
Mathieu Arnold
2016-06-06
1
-2
/
+1
*
Deprecate ports broken for more than 6 months
Antoine Brodin
2016-06-03
2
-0
/
+4
*
- Do install cmake and pkgconfig modules
Dmitry Marakasov
2016-05-27
2
-3
/
+8
*
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Kurt Jaeger
2016-05-26
8
-20
/
+23
*
Remove useless WRKSRC definitions.
Mathieu Arnold
2016-05-25
1
-2
/
+0
*
- Fix trailing whitespace in pkg-messages
Dmitry Marakasov
2016-05-19
6
-12
/
+12
*
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
Dmitry Marakasov
2016-05-19
21
-36
/
+36
*
Fix DEPENDS
Antoine Brodin
2016-05-18
1
-2
/
+2
*
- Convert to USES=mysql
Dmitry Marakasov
2016-05-16
1
-8
/
+4
*
- Update to 4.9a
Dmitry Marakasov
2016-05-16
2
-4
/
+7
*
biology/bowtie2: 2.2.7 -> 2.2.8
Kurt Jaeger
2016-05-13
2
-3
/
+3
*
Prevent collision with getline(3)
Baptiste Daroussin
2016-05-13
1
-0
/
+300
*
Prevent collision with getline(3)
Baptiste Daroussin
2016-05-13
1
-0
/
+291
*
Prevent collision with getline(3)
Baptiste Daroussin
2016-05-11
4
-6
/
+27
*
biology/seqan: update 1.3.1 -> 2.1.1
Jason Unovitch
2016-05-10
12
-1915
/
+3706
*
New port: biology/seqan-apps
Jason Unovitch
2016-05-10
5
-0
/
+220
*
Add final slash in WWW entry
Olivier Duchateau
2016-05-09
1
-1
/
+1
*
The BIOM file format (canonically pronounced biome) is designed to be a
Olivier Duchateau
2016-05-09
4
-0
/
+48
*
During the exp-run in bug 208158, it was found that biology/ugene gives
Dimitry Andric
2016-05-07
4
-0
/
+36
*
DNA query sequences against a protein reference database (BLASTP and BLASTX
Wen Heping
2016-05-06
5
-0
/
+71
*
- Update to 1.14.8
Danilo Egea Gondolfo
2016-05-01
3
-4
/
+4
*
biology/seqtools: 4.41.1 -> 4.42.1
Kurt Jaeger
2016-04-22
2
-5
/
+5
*
many ports: mark broken on powerpc64
Steve Wills
2016-04-21
1
-0
/
+2
*
- Switch to options helpers
Dmitry Marakasov
2016-04-17
3
-16
/
+17
*
- Update to 1.66
Wen Heping
2016-04-17
2
-4
/
+3
*
- Switch to options helpers
Dmitry Marakasov
2016-04-16
1
-3
/
+8
*
Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:
Mikhail Teterin
2016-04-16
3
-4
/
+5
*
Update to version 1.22.0, which now unfortunately requires Qt 5.x. Also
Alexey Dokuchaev
2016-04-14
9
-36
/
+204
*
- Add LICENSE
Dmitry Marakasov
2016-04-10
1
-1
/
+8
*
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
Mathieu Arnold
2016-04-01
38
-148
/
+148
*
- Update to 1.5.0
Dmitry Marakasov
2016-03-31
3
-23
/
+11
*
- Use more appropriate BROKEN instead of IGNORE
Dmitry Marakasov
2016-03-29
1
-4
/
+2
*
- Update to 5.12.0
Wen Heping
2016-03-27
3
-5
/
+7
*
- Clarify LICENSE
Dmitry Marakasov
2016-03-24
1
-4
/
+3
*
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
Dmitry Marakasov
2016-03-24
6
-0
/
+146
*
New port: biology/bowtie2.
Raphael Kubo da Costa
2016-03-23
6
-0
/
+134
*
New port: biology/slclust.
Raphael Kubo da Costa
2016-03-23
6
-0
/
+85
*
Trimmomatic performs a variety of useful trimming tasks for illumina
Wen Heping
2016-03-17
5
-0
/
+41
*
New port: biology/p5-transdecoder
Kurt Jaeger
2016-03-16
5
-0
/
+88
*
biology/seqtools: 4.40.0 -> 4.41.1
Kurt Jaeger
2016-03-14
3
-4
/
+6
*
Always set the DEFAULT github DISTFILE with .tar.gz for EXTRACT_SUFX.
Mathieu Arnold
2016-03-08
1
-2
/
+2
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