aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/coverm: Broken on i386Yuri Victorovich2024-10-061-0/+2
* biology/ncbi-cxx-toolkit: update 28.0.8 → 28.0.9Yuri Victorovich2024-10-062-4/+4
* biology/coverm: New port: Read coverage calculator for metagenomicsYuri Victorovich2024-10-054-0/+768
* biology/prodigy-lig: update 1.1.1 → 1.1.2Yuri Victorovich2024-10-042-5/+8
* */*: bump consumers after devel/boost* updateDima Panov2024-10-039-8/+9
* all: drop support for expired FreeBSD 14.0Rene Ladan2024-10-015-9/+5
* biology/fastani: New port: Fast Whole-Genome Similarity (ANI) EstimationYuri Victorovich2024-09-216-0/+60
* biology/kallisto: Update to 0.51.1,1Jason W. Bacon2024-09-192-4/+4
* biology/fermi-lite: Add ONLY_FOR_ARCHS lineYuri Victorovich2024-09-191-1/+5
* devel/grpc: Update to 1.66.1Po-Chuan Hsieh2024-09-151-1/+1
* biology/py-macs3: Update to 3.0.2Jason W. Bacon2024-09-145-30/+21
* */*: Bump dependencioes after devel/jsoncpp updateYuri Victorovich2024-09-121-1/+1
* biology/abyss: update 2.3.8 → 2.3.9Yuri Victorovich2024-09-122-4/+4
* biology/libsbml: Update to 5.20.4Po-Chuan Hsieh2024-09-082-9/+6
* biology/R-cran-BiocManager: Update version 1.30.24=>1.30.25Muhammad Moinur Rahman2024-09-082-4/+4
* biology/ncbi-cxx-toolkit: update 28.0.7 → 28.0.8Yuri Victorovich2024-09-082-5/+4
* biology/iqtree: Update to 2.3.6Joseph Mingrone2024-09-082-4/+5
* biology/andi: New ports: Efficient estimation of evolutionary distancesYuri Victorovich2024-09-074-0/+40
* biology/py-pyrodigal: update 3.5.1 → 3.5.2Yuri Victorovich2024-09-052-4/+4
* biology/R-cran-BiocManager: Update version 1.30.23=>1.30.24Muhammad Moinur Rahman2024-08-302-4/+4
* graphics/proj: Update to 9.4.1Loïc Bartoletti2024-08-281-0/+1
* */*: Bump PORTVERSION of math/nlopt consumersRainer Hurling2024-08-251-1/+1
* biology/R-cran-BiocManager: Skip pre-release version in portscoutMuhammad Moinur Rahman2024-08-231-0/+2
* devel/grpc: Update to 1.65.4Po-Chuan Hsieh2024-08-151-1/+1
* biology/fermi-lite: fix build on powerpc64lePiotr Kubaj2024-08-131-0/+1
* biology/linux-foldingathome: Point MASTER_SITES to the new locationMateusz Piotrowski2024-08-121-1/+1
* all: Bump after lang/go121 updateAshish SHUKLA2024-08-095-4/+5
* biology/ncbi-cxx-toolkit: update 28.0.6 → 28.0.7Yuri Victorovich2024-08-072-4/+4
* biology/{.py-}biosig: update 2.6.0 → 2.6.1Yuri Victorovich2024-08-054-9/+8
* biology/gatk: Update COMMENTYuri Victorovich2024-08-041-1/+1
* biology/gkl: New port: Accelerated kernel library for genomicsYuri Victorovich2024-08-0414-0/+179
* biology/gatk: Add dependencies biology/fermi-lite and biology/gkl; Add python...Yuri Victorovich2024-08-042-4/+15
* biology/wfa2-lib: fix build without libompPiotr Kubaj2024-08-041-0/+4
* biology/py-PySCeS: update 1.2.1 → 1.2.2Yuri Victorovich2024-08-033-6/+6
* biology/fermi-lite: New port: Library anf tool for assembling Illumina short ...Yuri Victorovich2024-08-034-0/+51
* biology/btllib: update 1.7.2 → 1.7.3Yuri Victorovich2024-07-272-4/+4
* biology/kallisto: Update to 0.51.0,1Jason W. Bacon2024-07-275-36/+29
* biology/py-mrcfile: update 1.5.2 → 1.5.3Yuri Victorovich2024-07-262-4/+4
* biology/p5-TrimGalore: Update to 0.6.10Neel Chauhan2024-07-232-4/+4
* biology/py-pyrodigal: update 3.5.0 → 3.5.1Yuri Victorovich2024-07-232-4/+4
* biology/abyss: update 2.3.7 → 2.3.8Yuri Victorovich2024-07-232-5/+4
* biology/py-mrcfile: update 1.5.1 → 1.5.2Yuri Victorovich2024-07-232-4/+4
* biology/minimap2: Add NOT_FOR_ARCHS for most 32-bit processorsJason W. Bacon2024-07-201-0/+3
* devel/automake: Update to 1.17Tijl Coosemans2024-07-202-6/+57
* biology/gatk: Fix fetchYuri Victorovich2024-07-202-4/+4
* biology/py-pyrodigal: update 3.4.1 → 3.5.0Yuri Victorovich2024-07-182-4/+4
* biology/gatk: Fix fetchYuri Victorovich2024-07-141-0/+11
* biology/gatk: Prevent execution of git hooks from $DISTDIR during fetchYuri Victorovich2024-07-131-1/+1
* biology/py-biom-format: update 2.1.10 → 2.1.16Yuri Victorovich2024-07-132-10/+7
* biology/py-scikit-bio: update 0.6.1 → 0.6.2Yuri Victorovich2024-07-132-5/+7